Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 236 / 3e-71 S-locus lectin protein kinase family protein (.1) AT1G11410 231 / 6e-70 S-locus lectin protein kinase family protein (.1) AT4G27290 191 / 2e-55 S-locus lectin protein kinase family protein (.1) AT4G21380 187 / 1e-53 ARK3 receptor kinase 3 (.1) AT4G21390 177 / 3e-50 B120 S-locus lectin protein kinase family protein (.1) AT1G11300 175 / 3e-49 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G65790 173 / 1e-48 ARK1 receptor kinase 1 (.1) AT1G61610 171 / 7e-48 S-locus lectin protein kinase family protein (.1) AT1G11330 166 / 2e-46 S-locus lectin protein kinase family protein (.1.2) AT1G11350 165 / 5e-46 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020052 [exp] 334 / 9e-109 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 301 / 4e-96 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 229 / 5e-69 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 218 / 5e-64 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10018402 [exp] 209 / 7e-62 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007611 [exp] 207 / 5e-61 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 207 / 1e-60 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 206 / 1e-60 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 203 / 2e-59 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028701 [exp] 287 / 2e-90 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 273 / 2e-85 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 271 / 7e-85 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 231 / 4e-70 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036532 [exp] 219 / 6e-70 AT1G11340 247 / 6e-75 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 227 / 1e-68 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 224 / 3e-67 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 222 / 2e-66 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 219 / 2e-65 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 218 / 9e-65 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10014723 pacid=23165596 polypeptide=Lus10014723 locus=Lus10014723.g ID=Lus10014723.BGIv1.0 annot-version=v1.0 ATGACGCCATTGACAATCCTCCTTCTCCTTCTCCTATTCCCCTGTTCTTCATCATTTCTCGACACCATAACCCCAAACAATCCCCTCCGGGACGGTGACC AACTAGTTTCCGGCGGTCAAACATTCGCGCTGGGGTTCTTCTCCCCTAAGAACTCTGCCCGCCGTTACGTTGGAATCTGGTTCCACACAGTCTCTGAGCA AACAATTGTCTGGGTGGCTAATAGAGATGCACCTCTCAACGACACTTCCGGGGTTCTGCCCCTCGATTCTTACGGCAACTTGAACCTCAACGCTCAAAAT GGAACTGATTTGTCAATTTGGTCAGCGGGAATCTCAACTCCTATGTACAATTCCGTTGTTCAGCTTCTCGACTCGGGGAATCTCGTCGTGTTAGCAAGAG ATATGGAGAAGGTGTTGTGGCAGAGCTTTGATTACCCGACAGATACTCTGCTTCCAAACATGAAAATCTCGCTAAACCGGAGAACCGGGTTGAAACAGTC AATGTCCTCTTGGAAGTCCGAAAGCGATCCAGGTATTGGTACGGTTTTGTACGAGATAAATCCGACCGGTTATCCGCAGCTAGTTCTGTATAAAAACTCC TCCGAACTCTGGAGGGGTGGTCCCTGGACCGGGAAACGGTTGAGCGGGGTGCAAGAGATGGGCAATTTTATCATCAACATCAGTTTCATAAACAATAATG ACGAGGTGTCGATATTCTACGAGTTGAGAAAAGATTATAATGGCTTAATCAACATGAGGATGTACGTGGACGAATCGGGGATGGTGAGGCGAGCTACCTG GCAAGATGGCGACCGTCGATGGGTCGAGTATTGGTCTGCCCCAAAGGAACTCTGTGATATCTATCGCACGTGTGGTCCCGAACACTAA
AA sequence Show only first row Show all	>Lus10014723 pacid=23165596 polypeptide=Lus10014723 locus=Lus10014723.g ID=Lus10014723.BGIv1.0 annot-version=v1.0 MTPLTILLLLLLFPCSSSFLDTITPNNPLRDGDQLVSGGQTFALGFFSPKNSARRYVGIWFHTVSEQTIVWVANRDAPLNDTSGVLPLDSYGNLNLNAQN GTDLSIWSAGISTPMYNSVVQLLDSGNLVVLARDMEKVLWQSFDYPTDTLLPNMKISLNRRTGLKQSMSSWKSESDPGIGTVLYEINPTGYPQLVLYKNS SELWRGGPWTGKRLSGVQEMGNFIINISFINNNDEVSIFYELRKDYNGLINMRMYVDESGMVRRATWQDGDRRWVEYWSAPKELCDIYRTCGPEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10014723 [exp]	0	1
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10036664 [exp]	5.6	0.6935
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	16.2	0.6816
AT4G30030			Eukaryotic aspartyl protease f...		Lus10011612 [exp]	19.1	0.6318
					Lus10001119 [exp]	23.6	0.5890
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	26.0	0.6464
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	26.9	0.6432
AT5G12060			Plant self-incompatibility pro...		Lus10000799 [exp]	29.2	0.5911
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	37.7	0.5854
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	49.2	0.6162
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	50.9	0.5992

Compare expression of checked genes

Lus10014723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.