Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 294 / 1e-92 ATTPS21 terpene synthase 21 (.1.2) AT1G70080 275 / 7e-85 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 271 / 4e-83 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 260 / 3e-79 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 259 / 1e-78 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G20230 257 / 9e-78 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G20210 254 / 6e-77 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 252 / 5e-76 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 246 / 5e-74 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 246 / 1e-73 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008611 [exp] 546 / 0 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 534 / 0 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10002660 [exp] 522 / 0 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10042202 [exp] 462 / 8e-158 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10008614 [exp] 461 / 2e-157 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10040043 [exp] 454 / 2e-154 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10031590 [exp] 394 / 3e-131 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10031589 [exp] 311 / 2e-98 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10012312 [exp] 236 / 1e-69 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 464 / 1e-158 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 403 / 1e-134 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 397 / 2e-132 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 392 / 3e-130 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 323 / 7e-104 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 322 / 3e-103 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 322 / 4e-103 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 319 / 2e-102 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 319 / 3e-102 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 298 / 1e-94 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10014724 pacid=23165605 polypeptide=Lus10014724 locus=Lus10014724.g ID=Lus10014724.BGIv1.0 annot-version=v1.0 ATGGATACAGCAGCAGTTAAGAGCGCACCTGAACGCCGAAAGACGCAATACTATCATCCCAGTGTATGGGGCGACTTCTTCGTCACCCATACCTTCGAAT CTGACGAGACGGTATCTGGTTGGAAAGAAGAAATTGCAGTGCTGAAATCTGAAGTGAAGAGGATGTTGTTGTTGGCTGAGACAACCAAATCCACAGAGAG GCTGAATTTACTAGATGCCATCCAGCGACTGGGCATCAGTTACCATTTCGAGCAGGAAATGGAGCAACTTATTCAGCAGGAAGTTCATGAGATTCCAAGT GCTAACGATGACCTTCATACTGTTGCACTCCGATTCAGGATACTAAGGCAACATGGCCATAACGCCCCCACCGAAGCATTCACGAAATTCAAGGACGAAG AAGCAGGAGGGTGGAAGAAAGAGTTGATAGATGATACTGAAGGGTTGTTAAGTTTGTACGAAGCTGCACATATGCGGATTCATGGAGAGACCATACTTGA TGAAGCCATGGACTTCACCGAAACCCACCTCATGGCTATCCAATTCGATGATGCCGGTTCCTCACTTGCTGAAAGAGTTGCCCGTGCTTTGAAACGTCCA CTGCGCAAGGACACTGATAGGATCCAACATCTCTTCTTTATCCCCAACTATGCTAAAATGGAAGGCCACAATCAATCTCTCCTCAAGCTAGCCAAGCTAA GTTATAATCTTCTCCAACACATGTACCAACACGAGCTTAAAGCTCTAACCAAGTGGTGGACTGAGTTGGAATTTGCGACGAGAGTGGATTATGCAAGAGA CAAACTAGTTGAGACTTACTATTGGGCAGTAGGGATGTTCTGGGAACCTAAATTTGCTCTGGCTCGATACTTTGTCACGAAAGGGACTACTCTCGGGACT GTGCTTGATGACACTTATGATGTCTACGGAACCTTTGAGGAACTTGAGTTGTTCACTACTAAGTTTGCTAGGTGGGCCGATACTGGTGCGATGGAGGATC TGGACATCAGGTTACAATATGTTTACAAGGCAGTTATGGATTTCAATCACGAAATCGACGAAATTACTTCAAAGGAAGGAAGGCCCTACTGTTTTGATTA TGCAAAGCGAGCGCTGAACGTTGATCTTACTGCATACCTGGAAGAACAAAGATGGTACGCCGAAGGTATTGTGCCGAGCTTAGAGGAATACAGGCAGCTT TCAGCAGTAACCACTTTTTACTTGGTGATTATGACTAGTGCACTCAGTGGCATGGGGTACTTGGCTCCAAAGGAAGTATTCAATTGGCTGTTGGCTAATC CTAAAGTTTTATTTGCTGCCGGAGATCATTGTCGTCTAATGGATGACATTGTGAGCCACGAGCGAGAACAAGAGAGGGGCCATGTAGACTCGGCTGTTCA GATTTACCAGAAACAATTAGGAGGGACCACAAAGGAAGCCGTAGATGTATTGAACGGTATGATTGATGATGATTGGCGGGTGATGAACGGAGAGATGCTC AACCCACCTACTCTCGCCGGTGGTCGTATTGTTCCTAAAGAAGTTATTACCTTATTCATGCGTATGGCGCAAGTTATGGAAGTGATATACAAGGAGATTG ATGGCTACACTTGCTCAGATACCGTCACCAAAGATGATATCACTGCATTGTTCGTCACCCTGATGAAATAA
AA sequence Show only first row Show all	>Lus10014724 pacid=23165605 polypeptide=Lus10014724 locus=Lus10014724.g ID=Lus10014724.BGIv1.0 annot-version=v1.0 MDTAAVKSAPERRKTQYYHPSVWGDFFVTHTFESDETVSGWKEEIAVLKSEVKRMLLLAETTKSTERLNLLDAIQRLGISYHFEQEMEQLIQQEVHEIPS ANDDLHTVALRFRILRQHGHNAPTEAFTKFKDEEAGGWKKELIDDTEGLLSLYEAAHMRIHGETILDEAMDFTETHLMAIQFDDAGSSLAERVARALKRP LRKDTDRIQHLFFIPNYAKMEGHNQSLLKLAKLSYNLLQHMYQHELKALTKWWTELEFATRVDYARDKLVETYYWAVGMFWEPKFALARYFVTKGTTLGT VLDDTYDVYGTFEELELFTTKFARWADTGAMEDLDIRLQYVYKAVMDFNHEIDEITSKEGRPYCFDYAKRALNVDLTAYLEEQRWYAEGIVPSLEEYRQL SAVTTFYLVIMTSALSGMGYLAPKEVFNWLLANPKVLFAAGDHCRLMDDIVSHEREQERGHVDSAVQIYQKQLGGTTKEAVDVLNGMIDDDWRVMNGEML NPPTLAGGRIVPKEVITLFMRMAQVMEVIYKEIDGYTCSDTVTKDDITALFVTLMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10014724 [exp]	0	1
					Lus10024934 [exp]	4.6	0.7755
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10035555 [exp]	7.5	0.7970
					Lus10043450 [exp]	8.7	0.7129
					Lus10014855 [exp]	10.0	0.7555
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030032 [exp]	12.0	0.7625
AT5G03050			unknown protein		Lus10030557 [exp]	14.9	0.7405
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10005079 [exp]	16.6	0.7613
					Lus10014650 [exp]	21.0	0.7302
AT3G14520		AtTPS18	Terpenoid cyclases/Protein pre...		Lus10002660 [exp]	21.5	0.7879
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026820 [exp]	21.8	0.7603

Compare expression of checked genes

Lus10014724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.