Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54640 221 / 4e-72 TRP3, TSA1 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) AT4G02610 211 / 5e-69 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002719 [exp] 254 / 3e-85 AT3G54640 438 / 6e-156 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Lus10024849 [exp] 228 / 9e-75 AT4G02610 447 / 7e-160 Aldolase-type TIM barrel family protein (.1) Lus10024848 [exp] 228 / 2e-71 AT4G02610 421 / 3e-144 Aldolase-type TIM barrel family protein (.1) Lus10018760 [exp] 217 / 2e-70 AT4G02610 434 / 1e-154 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217700 [exp] 208 / 2e-67 AT3G54640 435 / 9e-155 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1) Potri.002G045700 [exp] 205 / 4e-66 AT3G54640 432 / 9e-154 TRYPTOPHAN-REQUIRING 3, tryptophan synthase alpha chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00290 [flax] [poplar] Trp_syntA Tryptophan synthase alpha chain
Representative CDS sequence Show only first row Show all	>Lus10014725 pacid=23165608 polypeptide=Lus10014725 locus=Lus10014725.g ID=Lus10014725.BGIv1.0 annot-version=v1.0 ATGGCATTCATCCCATACATCACTGCTGGTGATCCGGACCTTTCAGTTACTGCGGAAGCTTTGAAAGTGTTGGACAGGTGTGGTTCTGACATAATCGAGC TTGGTGTTCCATACTCGGATCCTTTGGCTGATGGCCCAGTTATCCAGAGGCTGGATACGGCTTTAGGCCTGGCTATGTTGAAAATTTCTTTTGACTTTGA GTTGCTAAGTAGTGACTCAAGCTATGAATTGCACTCTGGACTTGTCGTTCCGGATGTGCCTCTAGAAGAGACTGAGCTTCTGAGGAGTGAAGCTTTGAAG AATAAGATTGAGCTGGTACTCCTTACAACGCCCACTACTCCAACAGACCGAATGAAAGCTATTGTAGAAGCTTCTGAGGGATTTATTTATCTGGTAAGCT CGATCGGAGTGACCGGTGCCCAAGCATCTGTAAGCAACAAAGTAGAATCCCTTTTGCAAGAAATAAAGAAGGTAACAACGAAGCCGGTAGCTGTCAGATT TGGGATATCAAAGCCTGAACATGTCCAACAGGTGGGGGGATGGGGTGCTGATGGTGATCGTAGGCAGTGCCATGGTGAAGTTGCTGGGTGA
AA sequence Show only first row Show all	>Lus10014725 pacid=23165608 polypeptide=Lus10014725 locus=Lus10014725.g ID=Lus10014725.BGIv1.0 annot-version=v1.0 MAFIPYITAGDPDLSVTAEALKVLDRCGSDIIELGVPYSDPLADGPVIQRLDTALGLAMLKISFDFELLSSDSSYELHSGLVVPDVPLEETELLRSEALK NKIELVLLTTPTTPTDRMKAIVEASEGFIYLVSSIGVTGAQASVSNKVESLLQEIKKVTTKPVAVRFGISKPEHVQQVGGWGADGDRRQCHGEVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	0	1
AT1G06980			unknown protein		Lus10009561 [exp]	1.0	0.7428
AT5G59100			Subtilisin-like serine endopep...		Lus10040751 [exp]	6.7	0.6570
AT4G14805			Bifunctional inhibitor/lipid-t...		Lus10010576 [exp]	10.5	0.5971
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10030054 [exp]	17.0	0.6594
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	27.5	0.6052
AT5G14530			Transducin/WD40 repeat-like su...		Lus10032128 [exp]	28.3	0.6255
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10004660 [exp]	29.2	0.6100
AT3G29240			Protein of unknown function (D...		Lus10030695 [exp]	31.2	0.5907
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	33.9	0.6439
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10029875 [exp]	33.9	0.5669

Compare expression of checked genes

Lus10014725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.