Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02590 250 / 6e-85 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 229 / 8e-76 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G24260 172 / 4e-53 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 171 / 4e-53 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 166 / 5e-51 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G50915 78 / 2e-17 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G10120 77 / 9e-17 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G09530 77 / 1e-16 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT5G48560 76 / 2e-16 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G07340 76 / 3e-16 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002720 [exp] 318 / 4e-111 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 273 / 2e-93 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 241 / 2e-80 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 227 / 3e-74 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 227 / 7e-74 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 175 / 8e-54 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 161 / 4e-49 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10033592 [exp] 77 / 7e-17 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10023562 [exp] 77 / 7e-17 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G217800 [exp] 273 / 3e-93 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 268 / 3e-91 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G053500 [exp] 251 / 3e-84 AT4G02590 228 / 1e-73 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.013G041000 [exp] 240 / 2e-79 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.006G186600 [exp] 182 / 1e-55 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 180 / 6e-55 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 157 / 5e-46 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.013G001300 [exp] 79 / 2e-17 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 79 / 3e-17 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G146500 [exp] 78 / 3e-17 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10014726 pacid=23165604 polypeptide=Lus10014726 locus=Lus10014726.g ID=Lus10014726.BGIv1.0 annot-version=v1.0 ATGCCCTCGTCTGTACCTGCAGCGCCACAACCACCAGCAATGCGTCCAAGGGTGAGGGCTAGAAGAGGACAAGCGACAGATCCACACAGTATTGCTGAAC GTTTGCGCCGAGAGAAAATAGCAGAAAGAATTAGGGCATTGCAGGAATTGGTGCCTAGTGTCAACAAGACAGATAGGGCTGCCATGCTCGATGAAATTGT GGATTATGTGAAGTTTCTCAGACTTCAAGTCAAGGTTCTGAGCATGAGTAGACTAGGAGGAGCTGGTGCAGTAGCACCACTTGTAACGGACATCCCACTA TCATCAGTCGAAGATGAAAATGGTGAAGGTGGGAGAAATCAACCGGCATGGGAGAAGTGGTCCAACGATGGAACAGAGAAACAAGTGGCGAAACTGATGG AAGAAAACGTCGGTGCTGCAATGCAGTTTCTACAATCGAAGGCACTCTGCATCATGCCAATATCCTTGGCATCAGCAATCTACCATACTCAATCGCAGGA TCCCCCATCCATTGTTAAACCAGAAGCGAATCCACCCTCATAG
AA sequence Show only first row Show all	>Lus10014726 pacid=23165604 polypeptide=Lus10014726 locus=Lus10014726.g ID=Lus10014726.BGIv1.0 annot-version=v1.0 MPSSVPAAPQPPAMRPRVRARRGQATDPHSIAERLRREKIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPL SSVEDENGEGGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQSQDPPSIVKPEANPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10014726 [exp]	0	1
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	2.4	0.8441
AT3G06270			Protein phosphatase 2C family ...		Lus10041242 [exp]	3.7	0.8358
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10002720 [exp]	4.5	0.7641
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	4.6	0.8025
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	10.8	0.7728
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10003990 [exp]	12.8	0.7297
AT1G31880		BRX, NIP3;1, NL...	BREVIS RADIX, DZC (Disease res...		Lus10030349 [exp]	16.1	0.7558
AT4G37810			unknown protein		Lus10011591 [exp]	16.1	0.7299
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	18.5	0.7317
					Lus10007510 [exp]	19.8	0.7187

Compare expression of checked genes

Lus10014726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.