Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02580 404 / 2e-144 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002721 [exp] 493 / 2e-179 AT4G02580 432 / 3e-155 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10018762 [exp] 466 / 1e-168 AT4G02580 439 / 5e-158 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Lus10024851 [exp] 449 / 1e-161 AT4G02580 418 / 2e-149 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218000 [exp] 434 / 6e-156 AT4G02580 460 / 2e-166 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1) Potri.002G045200 [exp] 432 / 3e-155 AT4G02580 458 / 8e-166 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF01257 [flax] [poplar] 2Fe-2S_thioredx Thioredoxin-like [2Fe-2S] ferredoxin
Representative CDS sequence Show only first row Show all	>Lus10014727 pacid=23165609 polypeptide=Lus10014727 locus=Lus10014727.g ID=Lus10014727.BGIv1.0 annot-version=v1.0 ATGCTAGGTCGTCTGGCAGCCACGCGCCTCCAGGAGATCCGTCAAGCTTTCCGCGGAGCTTCTCAGAGTTCCCGCTTGTTCTCGACTGCTCTGAACTACC ACATTGATTCTCCGGATAACCAACCTGACACACCATGGGAGTTTAGTGCCACAAACCAAGAGAAGGTTAAAGAGATAATATCACATTACCCATCCAACTA CAAGCAATCTGCAGTTATTCCGTTGCTAGATCTGGCACAGCAGCAGCATGGAGGATGGCTTCCAGTTTCAGCGATGAATGCGGTTGCCAAAGTTATTGGA GTTGCTCCCATCCGTGTTTATGAAGTTGCAACGTTCTATTCCATGTTCAACCGGACACCAGTAGGCAAGTACCACCTTTTAGTGTGTGGAACAACACCGT GCATGATCCGTGGGTCTCGAGAAATTGAAGATGCACTTGTGAAACATTTGGGAGTGAAACGCAATGAAGTAACAAAGGACGGCCTTTTCTCTATTGGAGA AATGGAATGTATGGGCTCCTGTGTAAATGCACCAATGATTACCGTTGCAGATTACTCTAATGGATCAGAAGGATACTCGTATAATTATTACGAAGACGTT ACTCCAAAACGAGTGGTTGAGATAGTTGAAATGCTGAGGAGAGGGGAAAAATTGCCAGCTGGAACACAAAACTCTAAGCGGATCAACTGTGGACCGGAAG GAGGCAATACCACCCTGCTCACTGAACCAAAGGCGCCTCCATGCCGAGATCTCGATGCCTGCTGA
AA sequence Show only first row Show all	>Lus10014727 pacid=23165609 polypeptide=Lus10014727 locus=Lus10014727.g ID=Lus10014727.BGIv1.0 annot-version=v1.0 MLGRLAATRLQEIRQAFRGASQSSRLFSTALNYHIDSPDNQPDTPWEFSATNQEKVKEIISHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNAVAKVIG VAPIRVYEVATFYSMFNRTPVGKYHLLVCGTTPCMIRGSREIEDALVKHLGVKRNEVTKDGLFSIGEMECMGSCVNAPMITVADYSNGSEGYSYNYYEDV TPKRVVEIVEMLRRGEKLPAGTQNSKRINCGPEGGNTTLLTEPKAPPCRDLDAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10014727 [exp]	0	1
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	3.5	0.8112
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	3.9	0.8034
AT5G41140			Myosin heavy chain-related pro...		Lus10008012 [exp]	5.5	0.8278
AT4G25330			unknown protein		Lus10006358 [exp]	12.5	0.8054
AT3G27090			DCD (Development and Cell Deat...		Lus10041557 [exp]	18.5	0.7424
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	21.4	0.6723
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10037705 [exp]	22.3	0.7944
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	22.6	0.7311
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Lus10024408 [exp]	29.5	0.7558
AT3G59090			unknown protein		Lus10004930 [exp]	29.7	0.8110

Compare expression of checked genes

Lus10014727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.