Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47720 103 / 4e-26 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT4G20010 100 / 4e-24 PTAC9, OSB2 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) AT5G44785 95 / 9e-22 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G31010 77 / 8e-16 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018763 [exp] 400 / 4e-141 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 382 / 2e-134 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 288 / 6e-98 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2) Lus10021767 [exp] 97 / 1e-22 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10032760 [exp] 0 / 1 AT1G47720 74 / 2e-15 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045100 [exp] 342 / 1e-118 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.005G218100 [exp] 338 / 4e-117 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.014G035600 [exp] 112 / 2e-28 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 105 / 7e-26 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) Potri.002G129166 [exp] 45 / 3e-05 AT1G47720 84 / 2e-19 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10014728 pacid=23165646 polypeptide=Lus10014728 locus=Lus10014728.g ID=Lus10014728.BGIv1.0 annot-version=v1.0 ATGGCGTTGGAGCGGCTGGCGCTGTCGAGTAAACTCTCTTTCTGCGTGCCGAGTAACCTTAAGGCCGGCGGAAGTTCTCCTGGTTCGTCGTTGTTAACTT CTACATGGTCAAGCTTCGAACCGCTGAGATTGAACTTCAGATTGAAGTGTTCGGCTGATTACAGAGACTACAACCCGAGCAGTCAGACGGCGGTGGTTGG ATACGAAAGACCGGCTGAGATTCCGTGGAAGAAGGAGCTCTGCAACTCGGTGCAGCTCATCGGAAACGTTGGAAGTCCCGTCGAGATTAAACACTTACCT TCAGGGAAGGTCGTGGCGTGGACGAGTCTCGCGTTCAAGAAGTCCGCCACCGAATCTTGCTGGATCAATCTGACATTCTGGAATGAAATGGCGGAAATCG CCTCTGAGCATGTACAAAAAGGGAACCAAATTTATGTCTCCGGTCGATTGATTGTAGACACCGTTGAGAATGAAGAAGGGAAGATCCAGACCTACTACAA GGTAGTCGTCCAGCAGTTGAATTTCATCGAAAGGAATGAATCTTCTTTCTCGTCATATGATGAAGAATCCTACATGAACGCTTCAGCAGCAAAAAAGTTC AACAATACTTCGAACATGGGTTCCATAGAAGAGCAATGGCAAGCATTTTTTGCTAGCCCTACAGAATGGTGGGATAACAGGAAGACAAAGAGAAACCCAA AGTATCCAGATTTCAAGCACAAGGATACAGGAGAATCACTGTGGGTGGAAGGCAGGTATAATCCATCGTGGGTGAAGTCTCAGTTGGCGATACTGGATGA ACGTATGGGATCGCTTCAGGACAACCATGATACTGGCGGTAAAGATCTCAGTCAAATGGGTACTGACGAATTCTTGTCATTCTAG
AA sequence Show only first row Show all	>Lus10014728 pacid=23165646 polypeptide=Lus10014728 locus=Lus10014728.g ID=Lus10014728.BGIv1.0 annot-version=v1.0 MALERLALSSKLSFCVPSNLKAGGSSPGSSLLTSTWSSFEPLRLNFRLKCSADYRDYNPSSQTAVVGYERPAEIPWKKELCNSVQLIGNVGSPVEIKHLP SGKVVAWTSLAFKKSATESCWINLTFWNEMAEIASEHVQKGNQIYVSGRLIVDTVENEEGKIQTYYKVVVQQLNFIERNESSFSSYDEESYMNASAAKKF NNTSNMGSIEEQWQAFFASPTEWWDNRKTKRNPKYPDFKHKDTGESLWVEGRYNPSWVKSQLAILDERMGSLQDNHDTGGKDLSQMGTDEFLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	0	1
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10016156 [exp]	3.7	0.8808
AT5G05180			unknown protein		Lus10030507 [exp]	6.7	0.8312
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	6.9	0.8260
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10003751 [exp]	7.1	0.8356
AT1G50000			methyltransferases (.1.2)		Lus10035666 [exp]	9.4	0.7890
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	9.5	0.8220
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10005148 [exp]	12.6	0.8007
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	14.0	0.8033
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10022539 [exp]	14.2	0.7800
AT3G13275			unknown protein		Lus10007090 [exp]	14.4	0.8200

Compare expression of checked genes

Lus10014728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.