Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04730 233 / 1e-76 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT4G14550 213 / 3e-69 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 214 / 4e-69 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 201 / 1e-64 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT4G29080 172 / 4e-52 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT5G65670 169 / 9e-51 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT2G22670 156 / 8e-46 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT1G04240 147 / 7e-44 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 144 / 8e-43 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G15540 132 / 6e-38 AUX_IAA MSG2, IAA19 MASSUGU 2, indole-3-acetic acid inducible 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002724 [exp] 426 / 8e-152 AT3G23050 212 / 5e-68 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) Lus10024854 [exp] 208 / 1e-66 AT3G04730 221 / 3e-72 indoleacetic acid-induced protein 16 (.1) Lus10015907 [exp] 203 / 1e-64 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10039414 [exp] 197 / 1e-62 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10006585 [exp] 168 / 1e-50 AT3G04730 254 / 3e-85 indoleacetic acid-induced protein 16 (.1) Lus10034962 [exp] 168 / 2e-50 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10019241 [exp] 166 / 1e-49 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10028222 [exp] 160 / 1e-47 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10011583 [exp] 158 / 1e-46 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041400 [exp] 242 / 4e-80 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.005G053900 [exp] 239 / 3e-79 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.002G044900 [exp] 238 / 8e-79 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.008G161200 [exp] 215 / 2e-69 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 213 / 7e-69 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 213 / 2e-68 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G108000 [exp] 171 / 5e-51 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.001G177400 [exp] 166 / 9e-51 AT3G04730 211 / 8e-69 indoleacetic acid-induced protein 16 (.1) Potri.001G186100 [exp] 169 / 2e-50 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.003G051300 [exp] 167 / 2e-49 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10014731 pacid=23165610 polypeptide=Lus10014731 locus=Lus10014731.g ID=Lus10014731.BGIv1.0 annot-version=v1.0 ATGGAAGTAGCGGTGAAGTCGGCTCCGACGGAGATTATGATGATGGGGTTTGACGAGACTGAGCTCCGACTTGGCCTTCCGGGAAACAACGCCGCAGCTG GTGATCAAGGGGATATAAACACTAGGAAGAGAGGCTTCTCTGAAACGACGTCGACGGTGGATCTGCAGCTCAATCTTTCTTCTTCCAAGGATGCGCCAGC TGTCAGTGACTGCAGTACTATTACTACTGCAACTGCTGCCCCTAAAAGTCTTCATCTTGCTGATCCAGCCACCAAGCCTCCTCCTCCCAAGGCGCAAGTG GTGGGATGGCCGCCAGTCCGATCTTTCAGGAAGAACATGATACAACCCACACCGCCACGTGTCCAGAAGAGCACCAGCCCAAATATTAAGGAGGAGGCGG TGGCGGAGAGCTGTGGCGCTGCCGAGCAGAAGGTGGTGACGGGGAGCTTCGTGAAGGTGAGCATGGACGGAGCTCCTTACCTGAGGAAGGTGGATTTGAG CATGTACGGCAGCTACAGGGAGCTCTCCGATGCGCTGCTCAAAATGTTCGGCTCCTTCAACGGCGGTGGAGGAGATCACTGCACCACCAAGGATTTCATG AACGAGAGCAAGCTTAGCGGTGGCGATAAAAATAATGAAGATATTTTCAACGGCGGCGACGATTGCGTCCCAACTTATGAGGACAAAGACGGCGACTGGA TGCTCGTTGGCGATGTCCCTTGGGGAATGTTTGTGGATTCATGCAAACGACTCCGTATCATGAAGGGAAAAGAGGCGATGGGTCTCGCACCAAGAGCCAT GGAGAAACGCAAGAACAGGATCTAG
AA sequence Show only first row Show all	>Lus10014731 pacid=23165610 polypeptide=Lus10014731 locus=Lus10014731.g ID=Lus10014731.BGIv1.0 annot-version=v1.0 MEVAVKSAPTEIMMMGFDETELRLGLPGNNAAAGDQGDINTRKRGFSETTSTVDLQLNLSSSKDAPAVSDCSTITTATAAPKSLHLADPATKPPPPKAQV VGWPPVRSFRKNMIQPTPPRVQKSTSPNIKEEAVAESCGAAEQKVVTGSFVKVSMDGAPYLRKVDLSMYGSYRELSDALLKMFGSFNGGGGDHCTTKDFM NESKLSGGDKNNEDIFNGGDDCVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGKEAMGLAPRAMEKRKNRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10014731 [exp]	0	1
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	1.7	0.8997
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10003251 [exp]	2.0	0.8991
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	4.5	0.9150
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	5.7	0.8664
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	8.2	0.9043
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002373 [exp]	10.1	0.8174
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	11.2	0.8865
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10005248 [exp]	11.6	0.8594
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	12.1	0.8736
AT5G50335			unknown protein		Lus10001469 [exp]	13.0	0.8724

Compare expression of checked genes

Lus10014731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.