Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12160 332 / 6e-117 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 332 / 7e-117 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT5G65270 292 / 5e-101 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 280 / 3e-96 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT1G16920 264 / 6e-90 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G07410 259 / 5e-88 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT4G18430 257 / 2e-87 AtRABA1e RAB GTPase homolog A1E (.1) AT5G60860 253 / 7e-86 AtRABA1f RAB GTPase homolog A1F (.1) AT1G09630 253 / 8e-86 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT5G59150 252 / 2e-85 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002725 [exp] 468 / 1e-170 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10016284 [exp] 319 / 2e-111 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10012032 [exp] 315 / 6e-110 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 310 / 2e-103 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 303 / 4e-103 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023153 [exp] 295 / 6e-102 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 294 / 1e-101 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 290 / 3e-100 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 290 / 4e-100 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G270100 [exp] 350 / 9e-124 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.016G050400 [exp] 325 / 7e-114 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 313 / 2e-109 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 300 / 3e-104 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 300 / 5e-104 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.010G197200 [exp] 264 / 6e-90 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.006G000300 [exp] 259 / 3e-88 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.011G070300 [exp] 259 / 7e-88 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.014G102200 [exp] 259 / 8e-88 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.003G004100 [exp] 258 / 9e-88 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10014732 pacid=23165669 polypeptide=Lus10014732 locus=Lus10014732.g ID=Lus10014732.BGIv1.0 annot-version=v1.0 ATGTCTAACTTGCACAGCAGTTACAATCAGAACATCGACTACGTGTTCAAGATCGTGCTAATCGGAGACTCTGCAGTCGGCAAGTCGCAGCTGCTCGCCA GATTCTCCAGGAATGAGTTCAATTTGGACTCCAAATCCACAATTGGGGTTGAGTTCCAGACGAAAACCCTCATCATCCACCACAAAACCGTCAAGGCCCA AGTCTGGGACACCGCCGGCCAAGAACGGTACCGGGCAGTGACAAGCGCATACTACAGAGGGTCATTGGGTGCTCTGTTGGTGTATGACATAACAAAGCGA GAATCTTTCGATCATATGAAGAGGTGGCTAACTGAACTAAGGGAGCATGCTGATGAGAACATTGTAATAATGCTCATTGGTAACAAGTCAGATTTGGGGA CCCAACGAGCTGTCCCATCTGAGGAGGCCAAAGAGTTTGCTGTATCCCAAAACCTCCTGTTTATGGAGACATCAGCACTTCAATCGACTAATGTCGAACC AGCTTTCGTCTCTGTCTTGACGGAGATCTATCGAATCGTCAGTAAGAAGACACTTCTCCCCAATGATCAGGAACACGAACCTAAGGGGAGTGCGACGCTT CTCAAGGGAACTGCGCTTGCTGTCAATAATAGTGAGTCGCAACTTGCTCAGGGAGGAACAAGTACTTACAGCTGCTGCAGAACCATGTAA
AA sequence Show only first row Show all	>Lus10014732 pacid=23165669 polypeptide=Lus10014732 locus=Lus10014732.g ID=Lus10014732.BGIv1.0 annot-version=v1.0 MSNLHSSYNQNIDYVFKIVLIGDSAVGKSQLLARFSRNEFNLDSKSTIGVEFQTKTLIIHHKTVKAQVWDTAGQERYRAVTSAYYRGSLGALLVYDITKR ESFDHMKRWLTELREHADENIVIMLIGNKSDLGTQRAVPSEEAKEFAVSQNLLFMETSALQSTNVEPAFVSVLTEIYRIVSKKTLLPNDQEHEPKGSATL LKGTALAVNNSESQLAQGGTSTYSCCRTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	0	1
AT3G51580			unknown protein		Lus10025140 [exp]	1.7	0.8580
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10029864 [exp]	4.0	0.7817
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	4.5	0.8141
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	7.1	0.8099
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	8.1	0.7998
AT3G51580			unknown protein		Lus10025224 [exp]	10.5	0.7791
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	13.4	0.7807
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	17.0	0.8061
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	17.9	0.8026
AT1G78800			UDP-Glycosyltransferase superf...		Lus10037008 [exp]	20.4	0.6435

Compare expression of checked genes

Lus10014732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.