Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02300 99 / 6e-25 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26450 97 / 3e-24 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 95 / 2e-23 ATPME2 pectin methylesterase 2 (.1) AT2G45220 95 / 2e-23 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 95 / 2e-23 ATPME3 pectin methylesterase 3 (.1) AT1G11580 94 / 3e-23 ATPMEPCRA methylesterase PCR A (.1) AT4G33230 94 / 3e-23 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 94 / 6e-23 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 94 / 6e-23 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 87 / 1e-20 ATPMEPCRF pectin methylesterase PCR fragment F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008203 [exp] 142 / 1e-40 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 100 / 2e-25 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 100 / 3e-25 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 99 / 6e-25 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028536 [exp] 92 / 7e-24 AT3G60730 322 / 6e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 96 / 2e-23 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 94 / 6e-23 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10009110 [exp] 91 / 6e-22 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010170 [exp] 87 / 2e-20 AT3G43270 628 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202500 [exp] 119 / 4e-32 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 108 / 3e-28 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 103 / 1e-26 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.012G126800 [exp] 101 / 9e-26 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 100 / 2e-25 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 100 / 3e-25 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162600 [exp] 97 / 5e-24 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.011G025400 [exp] 96 / 1e-23 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.015G013700 [exp] 96 / 1e-23 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 96 / 1e-23 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10014733 pacid=23165623 polypeptide=Lus10014733 locus=Lus10014733.g ID=Lus10014733.BGIv1.0 annot-version=v1.0 ATGTTCGTCGGCGATGGGATCGGCAAGGTCAAGGCCAACAAAACCTCGTCGATGGACGGCCCACTTTCCATTCCGCAACTGTGGGGAGGACCGAAAGAAA AAATTGGCATTGTTCTCCACAACTGTAAGTTTGCAGCCGCCACTGACCTTATCCCGGTCAAGATCCAGTTCAAGACTTACTTGGGCCGGCCCTGGAAGGC ATATTCGATGACTGCCATTGTGGGCTCGTACATAGATGACGTGGTGGACCCCGCAAGGTGGCTCGAGTGTGACGATTCAGGGGCAAGTTCGAATACCACT CAGAGAGTGCCATGGTCGGGTTATCGGGTTATTAAGAGTTCAATTGAGGCGAATAGGTTTACGTTTGGGCAGTTTATTCAGGGAGTTAGCGGCTCAATAC CACTGATATACCTTTCACTTCCGGTTTACGTTTGA
AA sequence Show only first row Show all	>Lus10014733 pacid=23165623 polypeptide=Lus10014733 locus=Lus10014733.g ID=Lus10014733.BGIv1.0 annot-version=v1.0 MFVGDGIGKVKANKTSSMDGPLSIPQLWGGPKEKIGIVLHNCKFAAATDLIPVKIQFKTYLGRPWKAYSMTAIVGSYIDDVVDPARWLECDDSGASSNTT QRVPWSGYRVIKSSIEANRFTFGQFIQGVSGSIPLIYLSLPVYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02300			Plant invertase/pectin methyle...		Lus10014733 [exp]	0	1

Compare expression of checked genes

Lus10014733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.