Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23090 54 / 2e-10 Uncharacterised protein family SERF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002728 [exp] 79 / 6e-18 AT2G24990 681 / 0.0 Serine/threonine-protein kinase Rio1 (.1) Lus10019287 [exp] 55 / 8e-11 AT2G23090 134 / 5e-43 Uncharacterised protein family SERF (.1) Lus10011535 [exp] 55 / 8e-11 AT2G23090 132 / 2e-42 Uncharacterised protein family SERF (.1) Lus10009316 [exp] 56 / 1e-09 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296600 [exp] 65 / 1e-14 AT2G23090 129 / 5e-41 Uncharacterised protein family SERF (.1) Potri.014G018400 [exp] 59 / 6e-13 AT2G23090 62 / 1e-14 Uncharacterised protein family SERF (.1) Potri.014G018100 [exp] 60 / 8e-13 AT2G23090 139 / 5e-45 Uncharacterised protein family SERF (.1) Potri.002G120100 [exp] 59 / 1e-12 AT2G23090 141 / 7e-46 Uncharacterised protein family SERF (.1) Potri.009G090800 [exp] 50 / 5e-09 AT2G23090 118 / 7e-37 Uncharacterised protein family SERF (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04419 [flax] [poplar] 4F5 4F5 protein related disordered region
Representative CDS sequence Show only first row Show all	>Lus10014734 pacid=23165576 polypeptide=Lus10014734 locus=Lus10014734.g ID=Lus10014734.BGIv1.0 annot-version=v1.0 ATGGGAGGAGGCAACGGCCAGAAATCGAAGACGGCTCGCGAGAGGAATATGGAAAAGCAAAAAGCTGCCCGAGGTAGCCAGCTCGAAACTAACAAGAAGG CCATGAATATTCAGAATATCAACTTGCACAGTTGGGACGGGGAGTTGTTAAGTGATTGTGTAGATGGTATGTTACGTTATGAATGTGTTGTGTCCAGGGG ATGTCTTTCTCAAGAACTGTATGGGTCAAAGTTCAACTTTGGACATAAGCCATTTGCATATGATATAGAGACGAGACATCCTTGTCCTTATTGTCATCAT CGTCGAAAGAATGATGGTTCGAGATCGTCTACTACATTCGAAGAAAGCTTGAAGAAGCTAATGGAAGAGAAGGACAAGCTAGCGGAGAAGAACGGATTGT TGTAA
AA sequence Show only first row Show all	>Lus10014734 pacid=23165576 polypeptide=Lus10014734 locus=Lus10014734.g ID=Lus10014734.BGIv1.0 annot-version=v1.0 MGGGNGQKSKTARERNMEKQKAARGSQLETNKKAMNIQNINLHSWDGELLSDCVDGMLRYECVVSRGCLSQELYGSKFNFGHKPFAYDIETRHPCPYCHH RRKNDGSRSSTTFEESLKKLMEEKDKLAEKNGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	0	1
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	3.2	0.8415
AT5G58110			chaperone binding;ATPase activ...		Lus10028103 [exp]	4.9	0.8364
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	5.3	0.8371
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Lus10020540 [exp]	6.3	0.8259
AT1G07350		SR45a	serine/arginine rich-like prot...		Lus10018202 [exp]	6.5	0.7914
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10029328 [exp]	8.1	0.7638
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	12.0	0.7927
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10014277 [exp]	15.6	0.7715
AT5G50460			secE/sec61-gamma protein trans...		Lus10035206 [exp]	17.0	0.7497
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	19.4	0.7948

Compare expression of checked genes

Lus10014734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.