Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002730 [exp] 258 / 8e-90 ND / Lus10014737 [exp] 250 / 1e-86 ND / Lus10037862 [exp] 130 / 2e-39 ND / Lus10030380 [exp] 116 / 9e-34 ND / Lus10037860 [exp] 117 / 2e-33 ND / Lus10037861 [exp] 115 / 2e-33 ND / Lus10002152 [exp] 108 / 1e-30 ND / Lus10028948 [exp] 108 / 2e-30 ND / Lus10029851 [exp] 103 / 2e-28 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G082700 [exp] 108 / 2e-30 ND / Potri.014G081800 [exp] 108 / 2e-30 ND / Potri.014G082000 [exp] 105 / 3e-29 ND / Potri.002G158600 [exp] 105 / 5e-29 ND / Potri.002G158700 [exp] 105 / 5e-29 ND / Potri.019G100100 [exp] 101 / 1e-27 ND / Potri.003G126200 [exp] 100 / 3e-27 ND / Potri.017G153100 [exp] 99 / 2e-26 ND / Potri.014G081900 [exp] 97 / 7e-26 ND / Potri.009G009700 [exp] 96 / 1e-25 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014735 pacid=23165600 polypeptide=Lus10014735 locus=Lus10014735.g ID=Lus10014735.BGIv1.0 annot-version=v1.0 ATGATGAACATCATTATTAGTGTTTCCCTACTACTCCTCCTCCCCTTTATCATTCCTGCAGAAGCCGGTCGAGTCGTCGCAGGGACAACACTACTAGTCC CTTCCAACGCGACCAGCGAGATCCAAGACGAGGTTTATCACGCGACGATGACCATCAACGGCTTCCAAAAGGGCCAGGACGGAGGAGGGCCCTCGGAGTG CGACGGGAATTACCACAGCAACAGCCAGAAGATAGTGGCGCTGTCTACCCACTGGTACCACGGTAGGTGCAATGATTGCATCAAGATTAAGTGGAGAGGG AAGACCACTACAGCCAAGGTTGTGGACGAATGCGATACGTCGAGGGGATGCAAGAAAAACATCGTAGACGCGTCCAAGGCTGTGTGGACGAGTCTTGGTG TGAAGAAGGGGAGCAGTGAGTTTGGCGAGACTAGTGTCACATGGGAGGAATGCTAG
AA sequence Show only first row Show all	>Lus10014735 pacid=23165600 polypeptide=Lus10014735 locus=Lus10014735.g ID=Lus10014735.BGIv1.0 annot-version=v1.0 MMNIIISVSLLLLLPFIIPAEAGRVVAGTTLLVPSNATSEIQDEVYHATMTINGFQKGQDGGGPSECDGNYHSNSQKIVALSTHWYHGRCNDCIKIKWRG KTTTAKVVDECDTSRGCKKNIVDASKAVWTSLGVKKGSSEFGETSVTWEEC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014735 [exp]	0	1
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000405 [exp]	1.7	0.7645
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039166 [exp]	2.0	0.7032
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042693 [exp]	9.4	0.6669
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10025196 [exp]	12.0	0.6710
					Lus10029497 [exp]	12.0	0.5429
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Lus10011955 [exp]	23.7	0.6612
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024620 [exp]	27.5	0.5666
AT1G60970			SNARE-like superfamily protein...		Lus10015263 [exp]	31.2	0.5135
					Lus10014003 [exp]	32.4	0.6497
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024716 [exp]	42.2	0.6322

Compare expression of checked genes

Lus10014735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.