Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014735 [exp] 249 / 2e-86 ND / Lus10002730 [exp] 249 / 3e-86 ND / Lus10037862 [exp] 127 / 3e-38 ND / Lus10037861 [exp] 117 / 3e-34 ND / Lus10030380 [exp] 116 / 8e-34 ND / Lus10037860 [exp] 111 / 3e-31 ND / Lus10002152 [exp] 109 / 5e-31 ND / Lus10028948 [exp] 107 / 2e-30 ND / Lus10041324 [exp] 104 / 5e-28 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081800 [exp] 110 / 4e-31 ND / Potri.014G082700 [exp] 108 / 2e-30 ND / Potri.002G158600 [exp] 104 / 1e-28 ND / Potri.002G158700 [exp] 103 / 2e-28 ND / Potri.019G100100 [exp] 101 / 1e-27 ND / Potri.014G082000 [exp] 99 / 9e-27 ND / Potri.003G126200 [exp] 98 / 2e-26 ND / Potri.017G153100 [exp] 99 / 3e-26 ND / Potri.014G081900 [exp] 95 / 5e-25 ND / Potri.009G009700 [exp] 94 / 9e-25 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014737 pacid=23165593 polypeptide=Lus10014737 locus=Lus10014737.g ID=Lus10014737.BGIv1.0 annot-version=v1.0 ATGAACATCATTATTAGTGTTTCCCTACTACTCCTCCTCCCCTTCATCATTCCTGCAGAAGGTCGAGTCGTTGGAGGGACAACACTACTAGTCCCTTCCA ACGTGACCAGCAAGATCCAAGACGAGGTTTACCACGCAACGATGACCATCAACGGCTTCCAAAAGGGCCAGGACGGAGGAAGGCCCTCGGAGTGCGACGG GAAGTACCACAGCAACAGCCAGGAGATAGTGGCGCTGTCTACCCACTGGTACAGCGGTAGGTGCAATGATTGCATCAAGATTAAGTGGAGAGGGAAGACC ACTACGGCTAAGGTTGTGGACGAATGCGATACGTCGAGTGGATGCAAGCAAAACATCGTAGACGCGTCCAAGGCTGTGTGGACTAGTCTTGGTGTGAAGA AGGGGAGCAGTGAGTTTGGTGAGACTAGTGTCACATGGGAGGAATGCTAG
AA sequence Show only first row Show all	>Lus10014737 pacid=23165593 polypeptide=Lus10014737 locus=Lus10014737.g ID=Lus10014737.BGIv1.0 annot-version=v1.0 MNIIISVSLLLLLPFIIPAEGRVVGGTTLLVPSNVTSKIQDEVYHATMTINGFQKGQDGGRPSECDGKYHSNSQEIVALSTHWYSGRCNDCIKIKWRGKT TTAKVVDECDTSSGCKQNIVDASKAVWTSLGVKKGSSEFGETSVTWEEC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014737 [exp]	0	1
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	1.0	1.0000
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	1.4	1.0000
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	1.7	1.0000
					Lus10021773 [exp]	2.0	1.0000
AT4G27170		SESA4, AT2S4	seed storage albumin 4 (.1)		Lus10040395 [exp]	2.2	1.0000
					Lus10039552 [exp]	2.4	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	2.6	1.0000
					Lus10019558 [exp]	2.8	1.0000
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10008000 [exp]	3.0	0.9920
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	3.3	0.9780

Compare expression of checked genes

Lus10014737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.