Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002731 [exp] 209 / 5e-71 ND / Lus10010117 [exp] 170 / 2e-55 ND 39 / 4e-04 Lus10003757 [exp] 166 / 2e-53 ND / Lus10028048 [exp] 164 / 4e-53 ND / Lus10010116 [exp] 158 / 2e-50 ND 36 / 0.007 Lus10012621 [exp] 156 / 2e-49 ND 38 / 0.002 Lus10003758 [exp] 143 / 1e-43 ND / Lus10028049 [exp] 112 / 1e-32 AT1G04520 38 / 9e-04 plasmodesmata-located protein 2 (.1) Lus10035753 [exp] 111 / 2e-31 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 44 / 4e-06 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014738 pacid=23165627 polypeptide=Lus10014738 locus=Lus10014738.g ID=Lus10014738.BGIv1.0 annot-version=v1.0 ATGCATTCCTCGTCCAAACTAGCAACACCAACTCTGCTTTTGGGCATGATGTTTTTGGTAAGTGTTGTCGACGCGAAATTTACGAACAAGACCCTCATCA GCCCACCTGTTTGCACAGGGAGATCGAAGAGTGACGATTACAACCACAAGGTGGAACATCTCATCGATAGCTTTGTGAAAGATACAAAGATAAGCAAAAG GAACATTTACAGTGATCGACAATTCAACTACAGCTACCCGGATCGAAACCCGGGCTCCCCTTTCGGGGTATCCACTTGCTACCAAGATATTGGAAAGCTT GATTGTTGGTCTTGTCTCGTCACGGTTAAGAACACAATCAAAGAGGTGTGCATCCACCCCATTGGTGCTACCGTCATACTCAAAGACTGCTCCATCTCCT TCAACGTCATCCTTTGA
AA sequence Show only first row Show all	>Lus10014738 pacid=23165627 polypeptide=Lus10014738 locus=Lus10014738.g ID=Lus10014738.BGIv1.0 annot-version=v1.0 MHSSSKLATPTLLLGMMFLVSVVDAKFTNKTLISPPVCTGRSKSDDYNHKVEHLIDSFVKDTKISKRNIYSDRQFNYSYPDRNPGSPFGVSTCYQDIGKL DCWSCLVTVKNTIKEVCIHPIGATVILKDCSISFNVIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10014738 [exp]	0	1
AT1G78160		APUM7	pumilio 7 (.1)		Lus10041139 [exp]	2.2	0.8422
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	13.6	0.8056
AT4G31880			unknown protein		Lus10026078 [exp]	17.1	0.7764
					Lus10028018 [exp]	17.6	0.6985
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Lus10015155 [exp]	24.0	0.7554
AT3G09080			Transducin/WD40 repeat-like su...		Lus10021129 [exp]	26.4	0.7502
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	30.6	0.7469
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	32.8	0.7459
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10024533 [exp]	35.6	0.7451
AT5G44150			unknown protein		Lus10011074 [exp]	37.0	0.6141

Compare expression of checked genes

Lus10014738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.