Plant FIBer expression Database

Lus10014739 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G06135 41 / 6e-06 unknown protein
AT1G06137 40 / 1e-05 unknown protein
AT2G31335 39 / 3e-05 unknown protein
AT2G31345 37 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024873
[exp]
72 / 2e-17 ND 37 / 2e-04
Lus10000703
[exp]
71 / 5e-17 AT1G06135 44 / 3e-07 unknown protein
Lus10024872
[exp]
67 / 2e-15 ND 39 / 3e-05
Lus10005525
[exp]
40 / 4e-05 ND 40 / 1e-05
Lus10006567
[exp]
39 / 9e-05 ND 35 / 0.001
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G221200
[exp]
52 / 8e-10 AT2G31335 / unknown protein
Potri.010G075100
[exp]
44 / 1e-06 ND /
Potri.002G041950
[exp]
41 / 1e-05 AT2G31335 / unknown protein
Potri.013G043600
[exp]
41 / 1e-05 AT1G06135 39 / 3e-05 unknown protein
Potri.001G380300
[exp]
38 / 0.0002 AT1G06137 40 / 2e-05 unknown protein
Potri.008G163200
[exp]
37 / 0.0003 ND /
PFAM info
Representative CDS sequence
>Lus10014739 pacid=23165594 polypeptide=Lus10014739 locus=Lus10014739.g ID=Lus10014739.BGIv1.0 annot-version=v1.0
ATGGGTTATTTAGGCGTGGTAGTGGTGGTAGCCATAACGTTGTTGGCTTCATTTCTCCAACCAGCTGAAATGAGAGTGTTGAAGAATAATAATGGAGGAG
AGGGAGGTCATCATGGTGGTGGTGGTGGTGGTTTGATTCTTCAGTCATTGCAGAAAGGTTCGGTAAGCGGGTCGGGTCCGAACCCATGCACCAACATCCC
GGGTCGGAACCCAGGGACCTGCACACTTGCTGTCAGTGCCATGCACGTTGCGGGCACTGCCTTCTTCACCGTCCCTCCTCCGGCGGCCGCTAAAGAGTCT
GGTCCGGAGATTTGA
AA sequence
>Lus10014739 pacid=23165594 polypeptide=Lus10014739 locus=Lus10014739.g ID=Lus10014739.BGIv1.0 annot-version=v1.0
MGYLGVVVVVAITLLASFLQPAEMRVLKNNNGGEGGHHGGGGGGLILQSLQKGSVSGSGPNPCTNIPGRNPGTCTLAVSAMHVAGTAFFTVPPPAAAKES
GPEI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10014739
[exp]
0 1
AT5G52400 CYP715A1 "cytochrome P450, family 715, ... Lus10039234
[exp]
1.0 0.9730
AT2G40740 WRKY ATWRKY55, WRKY5... WRKY DNA-binding protein 55 (.... Lus10034245
[exp]
1.7 0.9647
AT1G78410 VQ motif-containing protein (.... Lus10023308
[exp]
2.4 0.9650
AT2G24840 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) Lus10030663
[exp]
2.6 0.9536
AT1G07430 HAI2 highly ABA-induced PP2C gene 2... Lus10033955
[exp]
2.8 0.9512
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10039454
[exp]
9.8 0.9240
AT5G09360 LAC14 laccase 14 (.1) Lus10041067
[exp]
10.2 0.9629
AT3G52970 CYP76G1 "cytochrome P450, family 76, s... Lus10002839
[exp]
10.6 0.9633
AT5G17740 P-loop containing nucleoside t... Lus10003213
[exp]
11.7 0.9607
AT3G61680 alpha/beta-Hydrolases superfam... Lus10009811
[exp]
13.1 0.9299

Lus10014739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.