Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63450 425 / 1e-144 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G48520 422 / 1e-143 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT2G27690 413 / 4e-140 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G56630 395 / 5e-133 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 383 / 2e-128 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G01900 379 / 6e-127 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT5G08250 334 / 2e-109 Cytochrome P450 superfamily protein (.1) AT1G63710 330 / 2e-107 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT4G00360 330 / 7e-107 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 327 / 6e-106 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033853 [exp] 843 / 0 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 801 / 0 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 593 / 0 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 395 / 1e-132 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10012531 [exp] 384 / 2e-128 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10036024 [exp] 372 / 8e-124 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10032278 [exp] 330 / 1e-106 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10018217 [exp] 320 / 9e-104 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10010193 [exp] 321 / 2e-103 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220900 [exp] 654 / 0 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 650 / 0 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.002G042100 [exp] 646 / 0 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 644 / 0 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.012G096800 [exp] 426 / 3e-145 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031700 [exp] 404 / 2e-136 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.009G145400 [exp] 395 / 2e-133 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.004G185300 [exp] 395 / 3e-133 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.010G236700 [exp] 390 / 4e-131 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.001G331100 [exp] 387 / 8e-130 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10014741 pacid=23165636 polypeptide=Lus10014741 locus=Lus10014741.g ID=Lus10014741.BGIv1.0 annot-version=v1.0 ATGTTACTCGCCGTTGAGCTCATAGCCACATCCTTCCTTATCATTTCCGCACTATTATTCCTCTTCTTCTCCCCGAAGAAAACCACAAAACAACAACAAA CCACCGCCGCATCCCGCCGTCAGCCCAAACGCTACCCGATAATAGGCCACTCACTTGAGCTGATCAAGAACAAGGACAACCGAGTCGATTGGACTTCCGA CTTGCTCCAAGCGTCCCCGACAGCAACCGTCGTCGTACATATCCTTGGCCGCCACCGCCTCATCACGGCCAATCCAGCCACCGTGGAGCACATCCTCAAG CTTCAGTTCCATAACTACCAGAAGGGCGAAGACAGTCGGGCAATCCTGTTCGACTTGCTCGGCGACGGAATCTTCAATGCCGACGGCGCCTCCTGGAAGT TCCAGAAGCAAGTCTCCAGCCACGAATTCAACACCAAGTCTTTGAGGCATTTCGTCCAACATGTTGTGGACGTTGAACTTTCCGACCGGTTAATTCCTAT TCTCTCCGCCGCTGCTTCCAACGGGGCAGTCCTCGATTTGCAGGATATCTTACAGAGATTCACTTTCGACAACATCTGCAGAATCGCGTTCGGGTACGAT CCGGAGTACCTTCAGCCGTCTCTACCAGAAGCGGGATTCGCTGCGGCGTTCGAAGACGCATCGATGATAAGCGCATACAGGTTCATATCTATGTTCCCCG TGATATGGAAGGTGAAGAGAGCTCTGAATTTAGGATCGGAGAAGAGGCTGAAGGAGGCTGTCGGTGTAATTAGGGATTTCGCCAAGCGGATAGTGAAGGA GAAGAAGGACGAGCTGGAGAAGAAATCGTCCCTCGATTCTGTCGATCTCTTATCTCGATTCTTGAGCTCGGGGCATTCCGACGAGGATTTTGTCACCGAT ATTGTAATTAGCTTCATCCTCGCCGGACGAGACACAACCTCTGCCGCATTGACGTGGTTCTTCTGGCTGATCGCGGAGCACCCTGAAGTGGAGCGAAAAA TCCTCGAAGGGATCCACGAGAAGTCGGAGAATCCGATCTTCGAAGAAGTGAAGGATATGGTGTACACTCACGCTTCACTCTGCGAAGCCATGAGGTTGTA CCCACCGGTTCCGATGGACACGAAGATCGCGGAGAACGATGACGTTTTGCCGGACGGGACAGCGGTGAAAGGTGGGACCCGAATTACTTATCATCCATAT GCGATGGGGCGGTCCGAACGGGTTTGGGGACCCGACTGGGCGGAGTTTCGGCCGAAGAGGTGGCTGAAGAGGGCGTCAGAGGATAGCGAGAAGTGGAGTT TTGTGGCGAGGGATCCGTACAGTTACCCGGTTTTTCAGGCGGGACCCAGGGTTTGTTTGGGGAAGGAGATGGCGTTCTTGCAGATGAAACGAGTGGTAGC CGGAATATTGAGCAAGTTCAAGGTGGTCCCTGCGGCGGGAGATGGGTTTCAACCGGTGTATGTTTCGTTATTGACGGCGAAGATGAAAGGAGGGTTCCCG GTGAAGATTGAAGTGAGGGAGAACCAATGA
AA sequence Show only first row Show all	>Lus10014741 pacid=23165636 polypeptide=Lus10014741 locus=Lus10014741.g ID=Lus10014741.BGIv1.0 annot-version=v1.0 MLLAVELIATSFLIISALLFLFFSPKKTTKQQQTTAASRRQPKRYPIIGHSLELIKNKDNRVDWTSDLLQASPTATVVVHILGRHRLITANPATVEHILK LQFHNYQKGEDSRAILFDLLGDGIFNADGASWKFQKQVSSHEFNTKSLRHFVQHVVDVELSDRLIPILSAAASNGAVLDLQDILQRFTFDNICRIAFGYD PEYLQPSLPEAGFAAAFEDASMISAYRFISMFPVIWKVKRALNLGSEKRLKEAVGVIRDFAKRIVKEKKDELEKKSSLDSVDLLSRFLSSGHSDEDFVTD IVISFILAGRDTTSAALTWFFWLIAEHPEVERKILEGIHEKSENPIFEEVKDMVYTHASLCEAMRLYPPVPMDTKIAENDDVLPDGTAVKGGTRITYHPY AMGRSERVWGPDWAEFRPKRWLKRASEDSEKWSFVARDPYSYPVFQAGPRVCLGKEMAFLQMKRVVAGILSKFKVVPAAGDGFQPVYVSLLTAKMKGGFP VKIEVRENQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014741 [exp]	0	1
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018328 [exp]	1.7	0.8239
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	3.0	0.8364
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	5.3	0.8294
AT1G62420			Protein of unknown function (D...		Lus10035594 [exp]	6.3	0.8040
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029674 [exp]	7.9	0.7942
AT5G51040			unknown protein		Lus10043024 [exp]	8.2	0.8108
					Lus10002306 [exp]	9.7	0.7570
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10013952 [exp]	15.2	0.7737
AT5G17350			unknown protein		Lus10017620 [exp]	15.4	0.7604
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	15.7	0.8038

Compare expression of checked genes

Lus10014741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.