Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63450 419 / 3e-142 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G48520 410 / 6e-139 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT2G27690 397 / 4e-134 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G56630 390 / 5e-131 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G34540 383 / 2e-128 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G01900 376 / 9e-126 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT5G08250 341 / 3e-112 Cytochrome P450 superfamily protein (.1) AT5G23190 330 / 4e-107 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G24540 329 / 4e-107 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G63710 329 / 5e-107 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 801 / 0 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 769 / 0 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 593 / 0 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 385 / 7e-129 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10041562 [exp] 384 / 3e-128 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10012531 [exp] 378 / 5e-126 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10032278 [exp] 326 / 4e-105 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10018217 [exp] 322 / 2e-104 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040687 [exp] 321 / 5e-104 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220900 [exp] 648 / 0 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 647 / 0 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.005G220700 [exp] 642 / 0 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 639 / 0 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.012G096800 [exp] 424 / 3e-144 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031700 [exp] 397 / 5e-134 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.004G185300 [exp] 393 / 1e-132 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.009G145400 [exp] 387 / 4e-130 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.010G236700 [exp] 387 / 5e-130 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.001G331100 [exp] 387 / 1e-129 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10014742 pacid=23165606 polypeptide=Lus10014742 locus=Lus10014742.g ID=Lus10014742.BGIv1.0 annot-version=v1.0 ATGTTACTTACTGTCGAGTTCTTAGCCACAGGCTTCCTCGTTCTTCTAGCATTCTTTTTCTTCTTCTTCTATTCCCCTGTAGCTTCCACCAAAACCCCAA ACCAGAGCCCTAACCAATGGAAACGTTACCCGATCATCGGGCATTCGCTGGAGCTAATAAAGAACAAGGACCGCCGGGTCGAGTGGACCTCCGACTTACT CCAAGCCTCTCCTTCAGCCACTGTCGCCGTACGTTTCCTTGGCCGCCACCGCCTCTTCACGGCCAATCCCGCCAACGTCGAGCACATCCTCAAGACTCAG TTCAACAACTACCAGAAGGGCGAAGAGGGGCGTGCAATCCTCTTCGATTTGCTAGGCGACGGCATCTTCAACGCTGACGGCCCCTCCTGGAAATTCCAGA GGCAAGTCTCCAGTCACGAGTTCAACACCAAGTCATTGAGGCATTTCGTCGAACACGTGGTGGACGCGGAGCTTTTCGACCGTTTGATTCCTACTCTCTC TTTAGCGGCCGGAAAAGGAGAAGTCTTCGATCTGCAGGACATCTTACAAAGATTCTCTTTTGACAACGTCTGCAGAATCGCGTTCGGGCACGATCCGGGG TACCTTCATCCGTCTCTACCGGAGGCGGAATTTGCTACGGCGTTTGAAGACGCCTCAACGATAAGCACATTCAGGTTCATTTCGATTTTCCCTCTAGTAT GGAAGGTGAAGAGAGCTCTGAATTTAGGATCGGAGAAGCGGCTGAAGGAGGCTGTTAGCGTAATTAGGGATTTCGCCAAGCGAATCGTGAAGGAGAAGAA GGAAGAGCTGGAGAAGAAATCGTCGCTGGATTCCGTTGATCTATTGTCTCGATTCTTGAGCTCGGGACATTCCGACGAGGATTTCGTCACCGACATTGTA ATCAGCTTCATCCTCGCCGGACGGGACACGACCTCCGCCGCATTGACCTGGTTCTTCTGGTTGATCGCCGAGCACCCTGAAGTGGAGCGGGAGATCCACC GAGAGATTATGGAGAAATCGGAGAATCCGATCTTTGAGGAAGTGAAGGATATGGTCTACACTCACGCTTCGCTGTGCGAATCCATGAGGCTTTACCCGCC GGTACCGTTGGACACAAAGATTGCGGTTAACAATGACATTTTACCTGACGGGACGGTAGTTAAAGGCGGGACCCGAATCACTTATCATCCGTACGCGATG GGGCGGTCCGAGCGGGTCTGGGGACCTGACTATGCTGAGTTTCGGCCGGAGAGGTGGCTGAAGAGAGTATCTGAAGATAGCGAGAAGTGGAGTTTTGTGG CCAGGGATCCATACAGTTACCCGGTTTTCCAGGCGGGGCCCCGAGTTTGCTTGGGGAAGGAGATGGCGTTTTTGCAGATGAAACGAGTGGTTGCTGGAAT ATTGAGCAAGTTCAAGGTGGTACCGGCGGCAGGAGATGGGTTTCAACCGGTGTATGTTTCGTTATTGACAGCGAAGATGAAAGGAGGGTTCCCGGTGAAG ATTGTAGCGAGGGAGAAATTACCATCATAG
AA sequence Show only first row Show all	>Lus10014742 pacid=23165606 polypeptide=Lus10014742 locus=Lus10014742.g ID=Lus10014742.BGIv1.0 annot-version=v1.0 MLLTVEFLATGFLVLLAFFFFFFYSPVASTKTPNQSPNQWKRYPIIGHSLELIKNKDRRVEWTSDLLQASPSATVAVRFLGRHRLFTANPANVEHILKTQ FNNYQKGEEGRAILFDLLGDGIFNADGPSWKFQRQVSSHEFNTKSLRHFVEHVVDAELFDRLIPTLSLAAGKGEVFDLQDILQRFSFDNVCRIAFGHDPG YLHPSLPEAEFATAFEDASTISTFRFISIFPLVWKVKRALNLGSEKRLKEAVSVIRDFAKRIVKEKKEELEKKSSLDSVDLLSRFLSSGHSDEDFVTDIV ISFILAGRDTTSAALTWFFWLIAEHPEVEREIHREIMEKSENPIFEEVKDMVYTHASLCESMRLYPPVPLDTKIAVNNDILPDGTVVKGGTRITYHPYAM GRSERVWGPDYAEFRPERWLKRVSEDSEKWSFVARDPYSYPVFQAGPRVCLGKEMAFLQMKRVVAGILSKFKVVPAAGDGFQPVYVSLLTAKMKGGFPVK IVAREKLPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	0	1
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	1.0	0.9260
AT1G58330		ZW2	transcription factor-related (...		Lus10005041 [exp]	3.2	0.8993
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	3.9	0.8755
AT1G67330			Protein of unknown function (D...		Lus10006415 [exp]	4.5	0.8799
AT2G18030			Peptide methionine sulfoxide r...		Lus10041922 [exp]	5.9	0.8735
AT3G06150			unknown protein		Lus10004424 [exp]	6.9	0.8823
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036088 [exp]	8.5	0.8732
AT4G31330			Protein of unknown function, D...		Lus10020172 [exp]	11.0	0.8527
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10029222 [exp]	13.0	0.8545
AT5G08060			unknown protein		Lus10040513 [exp]	13.4	0.8716

Compare expression of checked genes

Lus10014742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.