Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30690 160 / 3e-41 Protein of unknown function, DUF593 (.1) AT1G08800 152 / 3e-38 Protein of unknown function, DUF593 (.1.2) AT5G16720 132 / 4e-32 Protein of unknown function, DUF593 (.1) AT1G70750 123 / 5e-29 Protein of unknown function, DUF593 (.1) AT1G18990 99 / 2e-21 Protein of unknown function, DUF593 (.1) AT1G74830 94 / 7e-20 Protein of unknown function, DUF593 (.1) AT4G13630 70 / 3e-12 Protein of unknown function, DUF593 (.1.2) AT5G06560 68 / 8e-12 Protein of unknown function, DUF593 (.1) AT4G13160 65 / 4e-11 Protein of unknown function, DUF593 (.1) AT3G54740 65 / 8e-11 Protein of unknown function, DUF593 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033854 [exp] 1088 / 0 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10024869 [exp] 651 / 0 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10018782 [exp] 627 / 0 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10006566 [exp] 132 / 2e-31 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10005527 [exp] 130 / 4e-31 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 110 / 1e-24 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 103 / 2e-22 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1) Lus10033123 [exp] 80 / 3e-15 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 77 / 3e-14 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220600 [exp] 247 / 5e-71 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 223 / 1e-62 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 208 / 6e-57 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 206 / 4e-56 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 155 / 9e-40 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.008G132200 [exp] 117 / 8e-27 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 110 / 1e-24 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.010G109900 [exp] 106 / 1e-23 AT1G70750 277 / 2e-80 Protein of unknown function, DUF593 (.1) Potri.012G073400 [exp] 101 / 3e-22 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 95 / 5e-20 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10014743 pacid=23165618 polypeptide=Lus10014743 locus=Lus10014743.g ID=Lus10014743.BGIv1.0 annot-version=v1.0 ATGGCTGCAAAAGGCTCATCATTTGGCCCAGCAACAAGGAGGAGGCTGAAGGGTTTGACAAGTGCTCTGAGATCAGCAGCTTGTGAATGGCTTCTCATCT TCTTGTTACTTCTCGATGCCGTCTTTGCCTACCTCCTCACCAAATTCGCGAGTTACTGCAACCTGCAAGTCCCCTGCATCTTATGTTCGCGGCTAGATCA CATACTAGGCCACGAGAAACCTGGTTTCTACCGTGACCTCATCTGCACCAGCCACCGAGTTGAGCTGTCATGCTTGATGTTCTGCCAAGATCACAACAAG CTCGCTGATGGCCGCTCAATGTGTGACGAATGCCTCCTGTCTTTCTCAGCGAATTCGGATAAAAACATGCAAAGGGTTGCGGTTGGGAAACTCGGGTTTG ATCTTGGATCTAATTACCTCCTTCCTGGTTCAGTGGCCACCAAGTTATGTTCGTGTTGCCGTATGCCTTGGAGGTCAAGACAGAGAGCAGATAGAATCCT GAAGCTGAAATCACCTAGGAGTTCTGTTTCCCCGAAGCCTCCTTTGCCACATCGTTTGAACCAGCAGGAGAGCTTGAGGAAGATAAGAGAGAAGTATTCT GGATCTTTAACTCCTTGTCGTTTTGGGAGTAGAGGGTTCGATTCCTTATCCCATGTTGGATACACAGAGCTGAAGTTCAATTCTGATTCCGAGTCTGAGT TTCAGTATTCTGATGACGACGAATATCACAACTTCGATCGCAAATTGGATGAGCTGCGGCACAAGGAAGTACATGATCCTACCGATCAATCTGATAGAGA AGCAGTAGAAGATGAAAGCAGAAAACTCATGGCTATGGTTGACTCACCCTCGTCTTTTAAAGCTTCAAAAGGTTCAGATGGCATTGCAACATTCAACGAT GCGAGAAATGAAGCTTTGACGCGTATGGAAACTACAGCAGTAGATGGCACTTCGTTGGAACATGAAAGAGTTGACGAGGATTTGCAGCCTTCCTCATCTC AAGATACCGATGAATCGGTGAAGTATGACGTTGAAGCTGATCATGAGAGTGAACCAAAGGTGAGTGAAGATCACTCGAGTTCTCGTGGCATCGAAACGCC ACCAGAACCAGTTTCGAAAGAGAAAGTTCATCACGATGCCAATGTCGAACCGGCGCTTGATGTGATCGTCGGAGAAATCGAGGGCGAAACTATCGAGGAA AGGTTGAGAAGGCAAGTAGAGCACGACAGGATCGTCATAAGTACGTTGACTAAGGAACTGGAGGAAGAGCGAAGTGCTTCATCGATTTCCACGAACCAGA CAATGGCAATGATCACAAGGTTGCAAGCGGAGAAAGCAGCGCTCCATATGGAAGCGCTGCAGTATCTACGAATGATGGAAGAGCAAGCCGAATACGATGG AGAGGAGCTCGAGAAAGTAAATGACATCCTTGCCGAGAGGGAGAAGGAATTGCAGGATTTAGAGGCCGAGTTAGAGTATTTCAGGTTAAAATACCCTTAT GATCAAGAGGAAGAAGAAGATACAGCAGGGAGTTCGATTCCTAACAACTCTGCAATGTCTAGTACTACAAGTAGAGACGAGAAAGGTGATAACTTTGCTA AATCGTCGTGGCCAGACATCGAGGAAGAGAAGTCGTTCATTTTCCTGAGGTTGAAGAGTTTGGAGAGGAAGTTGCAGAAACTTTCTCGTTGTTCAGCTTC ACCGTATATGTCCGACAGCGAGTATTCTGAAGATACGGCTGATAGAGGAGGAGTAGATATGGGGGAGTTTGTGTTAGGTAACAATGAGATTAGGAATGGG CAAAGAACTCCGAACCCACAACACGAGGCGGCTGGATTCGGAACTCTTAAGAATGAGATCAGTATCTTGAATGAAAGGTTGGAAGCACTAGAAACTGATT GGAGTTTCCTTGAGCATGCTTTTAATTCACTGGAGAGTGGGAAAGAAGGGCTGCAGTTTGTTCAAGATATTGCGCATCGGCTTCAGGAACTGCGCAAAAT CGGGTTTCGTAGTAGTAGCTAG
AA sequence Show only first row Show all	>Lus10014743 pacid=23165618 polypeptide=Lus10014743 locus=Lus10014743.g ID=Lus10014743.BGIv1.0 annot-version=v1.0 MAAKGSSFGPATRRRLKGLTSALRSAACEWLLIFLLLLDAVFAYLLTKFASYCNLQVPCILCSRLDHILGHEKPGFYRDLICTSHRVELSCLMFCQDHNK LADGRSMCDECLLSFSANSDKNMQRVAVGKLGFDLGSNYLLPGSVATKLCSCCRMPWRSRQRADRILKLKSPRSSVSPKPPLPHRLNQQESLRKIREKYS GSLTPCRFGSRGFDSLSHVGYTELKFNSDSESEFQYSDDDEYHNFDRKLDELRHKEVHDPTDQSDREAVEDESRKLMAMVDSPSSFKASKGSDGIATFND ARNEALTRMETTAVDGTSLEHERVDEDLQPSSSQDTDESVKYDVEADHESEPKVSEDHSSSRGIETPPEPVSKEKVHHDANVEPALDVIVGEIEGETIEE RLRRQVEHDRIVISTLTKELEEERSASSISTNQTMAMITRLQAEKAALHMEALQYLRMMEEQAEYDGEELEKVNDILAEREKELQDLEAELEYFRLKYPY DQEEEEDTAGSSIPNNSAMSSTTSRDEKGDNFAKSSWPDIEEEKSFIFLRLKSLERKLQKLSRCSASPYMSDSEYSEDTADRGGVDMGEFVLGNNEIRNG QRTPNPQHEAAGFGTLKNEISILNERLEALETDWSFLEHAFNSLESGKEGLQFVQDIAHRLQELRKIGFRSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	2.4	0.8254
AT1G76970			Target of Myb protein 1 (.1)		Lus10017220 [exp]	3.5	0.7889
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	5.5	0.7590
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	7.5	0.7348
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	7.7	0.7338
AT3G20530			Protein kinase superfamily pro...		Lus10040050 [exp]	7.9	0.7512
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10043093 [exp]	8.9	0.7323
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	9.6	0.7837
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	16.1	0.7796
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	19.4	0.7283

Compare expression of checked genes

Lus10014743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.