Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30630 794 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G06750 778 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G04280 566 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033855 [exp] 1051 / 0 AT2G30630 804 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041167 [exp] 494 / 5e-171 AT2G30630 524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021226 [exp] 412 / 4e-141 AT1G04280 445 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021885 [exp] 400 / 1e-134 AT2G30630 442 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10022217 [exp] 368 / 5e-124 AT1G04280 416 / 2e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021884 [exp] 201 / 5e-60 AT2G30630 224 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021225 [exp] 69 / 8e-13 AT1G06750 66 / 3e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220000 [exp] 812 / 0 AT1G06750 803 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G043000 [exp] 799 / 0 AT1G06750 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G162000 [exp] 585 / 0 AT1G04280 549 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G162400 [exp] 508 / 1e-176 AT1G04280 491 / 4e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF06414 [flax] [poplar] Zeta_toxin Zeta toxin
Representative CDS sequence Show only first row Show all	>Lus10014744 pacid=23165617 polypeptide=Lus10014744 locus=Lus10014744.g ID=Lus10014744.BGIv1.0 annot-version=v1.0 ATGGCGAATTCATTTCTCGTCTCCATCCTAACCTCTCAACCCTTCTCCCTCATTCATCATTTCGACACATTCCATCAGGTCATAATAGCCTCTTTCGTCG GATTGATCCTCGTAATCTCAGTGACTTACCGATACCAGAAGCTTCGGGATCGGAGGATCGTCCCTCGCCTGAGGCCGTCGCTGTCCGGCCGCCGCACCGA GAAGCTCGAAAGGTTTTCTCACTATGTAGGTCAGATTTCAAATTTTGAATCCGCGGAATTGACCGCGATTGTTTATGCAGCAAGACAGATGGGATTTGGT GACAGGAGGCAGTGCCCGCATCTGTGCAAGCTGGCGTCGGAGTACATTAGGAAGACGGAGACGTGCGAGGAAGACGTGTTCGCGTTCTTCGCCGACGAGC TAGACGCCGATTCCCTGTTCGTCAAGCTGGTTGAGGAGTTGGAGAGGTGCATCCTAAGTTACTTCGCCTTCCATTGGACCCATGCCGATCTCATCATCAG TCAGGTTTTGAGTGCTGACATTGCAGAGCCCAAGAAGAAATTCAAGCACTTTGTCATGGCTGCCACTAGGGAACAGAGATTTGAGAGGGTGACTAAGGAT TTGAAAGTGGCTAGGGTGTTCAATACATTGGTAGAGGAAATGAAAGCTATGGGGTTAGCTTCAAATGATGATTCCTGTACAGAAGTCATGGCCCCTGTAG CTCATTCTGACCGAAGTCCAGTCCTCTTGCTCATGGGTGGTGGCATGGGTGGTGGCAAAAGTACTGTCCTCAAAGACATCCTCAAAGAACCTTTTTGGGC GGGAGCATCAGGGAATGCAGTAGTGATTGAAGCAGACGCGTTCAAGGAATCAGATGTTATCTTCAAGGCTCTAAGCTCCAGGGGACATGTTGACATGATT CAGACAGCTGAACTTGTGCATCAATCATCAACAGATGCAGCATCTTCCCTATTGGTGACAGCACTGAACGACGGTCGAGATGTGATCATGGACGGGACGC TCTCCTGGCTGCCATTCGTGGTGCAGACCATAACAATGGCGAGAAATGTACACAGGAAACGTTACAGGATGGGAGCTGGGTATAGAGTAGCGGATGATGG AGCTGTAACAGAGAACTACTGGGAGCAAATTGAAGAAGAACAACCTCTTGACGAAGGAAACAAGAAGAGGAAGCCTTACAGGATAGAGCTCGTTGGTGTT GTTTGTGATGCTTACCTAGCTGTCGTCAGAGGCGAAAAATGCAGGAGAGCCATAATGTGCAGAAGAGCAGTAAGGGTGAGGTCACAACTGAAGTCGCACA AGAGATTTGCTAATGCCTTCTTAACTTACTGCCAATTAGTTGATAATGCCAGGCTATACTGCACCAATGTGTTGGAAGGCCCACCTAAGTTGATAGGATG GAAAGAGAGGGACAAGACACTGTTGGTTGATTCAGATGAAATCGACTGCTTAAAGAGAGTGGGGAAATTGAACGAGGAAGCAGACTCCATTCATGAACTA TACCCAGTTCCTAACCCAGCTTGTGCTGCTGGTTCGATCTGGAAAGACATTGTGCTTTCACCTTCAAGGATCAACATTCAGAAAGAATTGAAGTATTCCA TCCAGAAAGTTGAACGAGCTAAAAACATAACTCAAAGCTCTCGGATGTGA
AA sequence Show only first row Show all	>Lus10014744 pacid=23165617 polypeptide=Lus10014744 locus=Lus10014744.g ID=Lus10014744.BGIv1.0 annot-version=v1.0 MANSFLVSILTSQPFSLIHHFDTFHQVIIASFVGLILVISVTYRYQKLRDRRIVPRLRPSLSGRRTEKLERFSHYVGQISNFESAELTAIVYAARQMGFG DRRQCPHLCKLASEYIRKTETCEEDVFAFFADELDADSLFVKLVEELERCILSYFAFHWTHADLIISQVLSADIAEPKKKFKHFVMAATREQRFERVTKD LKVARVFNTLVEEMKAMGLASNDDSCTEVMAPVAHSDRSPVLLLMGGGMGGGKSTVLKDILKEPFWAGASGNAVVIEADAFKESDVIFKALSSRGHVDMI QTAELVHQSSTDAASSLLVTALNDGRDVIMDGTLSWLPFVVQTITMARNVHRKRYRMGAGYRVADDGAVTENYWEQIEEEQPLDEGNKKRKPYRIELVGV VCDAYLAVVRGEKCRRAIMCRRAVRVRSQLKSHKRFANAFLTYCQLVDNARLYCTNVLEGPPKLIGWKERDKTLLVDSDEIDCLKRVGKLNEEADSIHEL YPVPNPACAAGSIWKDIVLSPSRINIQKELKYSIQKVERAKNITQSSRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30630			P-loop containing nucleoside t...		Lus10014744 [exp]	0	1
AT2G30630			P-loop containing nucleoside t...		Lus10033855 [exp]	1.0	0.8725
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10011001 [exp]	9.3	0.8604
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	9.4	0.8390
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10039914 [exp]	11.5	0.8392
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	16.0	0.8369
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	21.5	0.8226
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	22.8	0.7855
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	24.7	0.8154
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10040709 [exp]	25.0	0.8196
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10001777 [exp]	27.1	0.8053

Compare expression of checked genes

Lus10014744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.