Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30590 253 / 2e-81 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT5G28650 216 / 9e-68 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT3G04670 216 / 1e-67 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT4G31550 170 / 4e-50 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G23320 169 / 1e-49 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G24240 166 / 4e-48 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G24570 164 / 5e-48 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT3G58710 108 / 2e-27 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G34830 108 / 2e-26 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G29280 105 / 2e-26 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033857 [exp] 525 / 0 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10024864 [exp] 352 / 5e-121 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10018776 [exp] 349 / 1e-119 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10021999 [exp] 199 / 3e-61 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10042538 [exp] 196 / 5e-60 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10041600 [exp] 178 / 8e-53 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10010053 [exp] 171 / 5e-50 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1) Lus10026936 [exp] 167 / 1e-48 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10020136 [exp] 166 / 1e-48 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219500 [exp] 409 / 2e-143 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.002G043500 [exp] 408 / 8e-143 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.013G042600 [exp] 318 / 3e-107 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2) Potri.005G055300 [exp] 254 / 4e-82 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2) Potri.007G047400 [exp] 188 / 7e-57 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G141400 [exp] 184 / 2e-55 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.002G123300 [exp] 183 / 1e-54 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.003G111900 [exp] 178 / 2e-53 AT2G30590 154 / 5e-44 WRKY DNA-binding protein 21 (.1) Potri.014G024200 [exp] 178 / 1e-52 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.018G008500 [exp] 172 / 7e-51 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10533 [flax] [poplar] Plant_zn_clust Plant zinc cluster domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10014745 pacid=23165642 polypeptide=Lus10014745 locus=Lus10014745.g ID=Lus10014745.BGIv1.0 annot-version=v1.0 ATGGAGGAAGTTGAGGCAGCCAACAGGGCAGCGGTAGAGAGCTGCAATAGGGTTTTGAATTTGCTGAACCAGCCCCAACAAGAACAAGTCCACTACAGGA ATTTGATGGTGGAAACTGGGGAAGCTGTGTTTAAGTTCAAGAAAGTTGTTTCTCTTCTCAATACTGGTTTAGGTCATGCTAGGGTCAGAAAGATCAAGAC TTTACCCTCGTCTCTGTCCCATAACATCCTTTTGGACAACCCTTATCAACATACTAGAGCAGATCAGCCGTCCAAGAGTTACCAGTTTATAAAATCCAGT GGCTATCTTGAAACTGGTTCTTCATCAGCTGCAAAGACTGCTCTTTGCTTGGGGAACTCTTCCTCTTTGGAGTTGAGCAGCTCCTCCAACGGGAAAAGTC CCTTCCAGCTTGTTCAACAAACTGGACATTTTCAGTTGCTTCAGCAGCAGCAGCTGCAAAGGATGCAACTTCAGCAACGACAACAGCAACAGCAGCAAAT GAAGCTGCAGCAGGCTGACATGATATTTAGAAGGAGCAATAGTGGGATTAGCCTGAATTTTGATAGCTCTAGCTGCACACCTACTATGTCATCCACTAGA TCTTTCATGTCTTCCTTGAGTATAGACGGTAGCGTGACAAACATGGATGGGAGCGCATTCGGTCTGATGGGCGCGCCTCGTTCTTCGGACCAGAGTTCTC AGCAGCAGCAGCATCACAAGAGGAAGTGTTCTGCTAGGGGTGAAGATGGGAGTGTGAAGTGTGGAAGCACTGGCAGGTGCCATTGTTCTAAGAAGAGGAA ACATAGGGTGAAGAGGTCCATCAAGGTTCCTGCAATTAGCAACAAGCTTGCAGATATTCCTCCTGACGATTTTTCGTGGAGGAAGTACGGGCAGAAGCCA ATTAAGGGCTCTCCTCATCCTAGAGGGTACTACAAATGCAGCAGCATGAGAGGCTGTCCGGCAAGGAAGCACGTCGAGAGATGCCTGGAAGAGCCATCAA TGCTCATTGTTACTTATGAAGGCGAACACAACCACCCGAGGATACCAACGCAATCTGCAAATACATCGTAG
AA sequence Show only first row Show all	>Lus10014745 pacid=23165642 polypeptide=Lus10014745 locus=Lus10014745.g ID=Lus10014745.BGIv1.0 annot-version=v1.0 MEEVEAANRAAVESCNRVLNLLNQPQQEQVHYRNLMVETGEAVFKFKKVVSLLNTGLGHARVRKIKTLPSSLSHNILLDNPYQHTRADQPSKSYQFIKSS GYLETGSSSAAKTALCLGNSSSLELSSSSNGKSPFQLVQQTGHFQLLQQQQLQRMQLQQRQQQQQQMKLQQADMIFRRSNSGISLNFDSSSCTPTMSSTR SFMSSLSIDGSVTNMDGSAFGLMGAPRSSDQSSQQQQHHKRKCSARGEDGSVKCGSTGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDFSWRKYGQKP IKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPTQSANTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	0	1
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	2.0	0.8882
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	2.0	0.8811
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	4.0	0.8524
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	4.5	0.8515
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	4.9	0.8409
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	5.5	0.8688
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	6.6	0.8312
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10026118 [exp]	7.1	0.7771
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	10.0	0.7466
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	10.6	0.8284

Compare expression of checked genes

Lus10014745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.