Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49142 223 / 7e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11460 219 / 6e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G13410 215 / 1e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 220 / 8e-67 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 219 / 3e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 210 / 4e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 209 / 2e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 207 / 3e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 209 / 5e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G19191 206 / 8e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033858 [exp] 459 / 1e-161 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 224 / 3e-69 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014211 [exp] 222 / 8e-69 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022702 [exp] 219 / 2e-68 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031028 [exp] 213 / 3e-65 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021069 [exp] 209 / 6e-65 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021068 [exp] 209 / 6e-65 AT1G13410 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030225 [exp] 205 / 7e-65 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 211 / 1e-64 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G121400 [exp] 233 / 9e-74 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G211400 [exp] 229 / 8e-72 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 226 / 3e-70 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 216 / 8e-67 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 217 / 3e-66 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 216 / 4e-66 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 212 / 7e-66 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.016G128900 [exp] 214 / 2e-65 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 212 / 5e-65 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 210 / 2e-64 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014746 pacid=23165637 polypeptide=Lus10014746 locus=Lus10014746.g ID=Lus10014746.BGIv1.0 annot-version=v1.0 ATGTACGCAAAGTGCGGAAACATAGGCCAGGCAGAGGATGTTTTCAAGAATTTGACAGAAAAAACAGTTGTGTCCTGGACTTCAATTATCGGGGCTTTGG CGTACCATGGCCGTGCAATCGAAGCTCTTGAGCTCTTCGCGCAGATGAAAGAAGAGGGCACCAGACCGAATGGCTTCACATTCACTGCTATCTTGACTGC TTGTAAGCATGCAGGTCTTGTGGATGAGGGGAGGAAGCAATTTGAGAGTATGTTCAAGGAATACTCCATTGTTCCTGGAATCGAGCAGTGTGCTTGTATG GTCGATCTCCTTGGGAGAGCTGGTTGTTTGACTGAGGCTTACGAATTCATCGAGAGCATGCCGATTCGGGCGGATCCAAGTGTGTGGGGTGCATTACTCG GTGCTTGCAGAATTTATGAGGATTGCGAACTTGCTGAGCTTGTGGCAGAGAAGCTGATTAAGTTGGACCCTCGGGACATAACTCCTTACGTCATTATGTC TCACATTTATTGTAATGCTGGCCGGTCGGAAGATGTATTGAGGTTAAGAAAGTTGATGAGAGAAAGGCAATTGAAGAAGTTACCTGGTCATAGTCTTGTC GAGGCAAATCGTCGACTTCATAGGTTTCTAGTAGATTCAAGGCCCCGACCATCTTGGCCAGCTGTGTGA
AA sequence Show only first row Show all	>Lus10014746 pacid=23165637 polypeptide=Lus10014746 locus=Lus10014746.g ID=Lus10014746.BGIv1.0 annot-version=v1.0 MYAKCGNIGQAEDVFKNLTEKTVVSWTSIIGALAYHGRAIEALELFAQMKEEGTRPNGFTFTAILTACKHAGLVDEGRKQFESMFKEYSIVPGIEQCACM VDLLGRAGCLTEAYEFIESMPIRADPSVWGALLGACRIYEDCELAELVAEKLIKLDPRDITPYVIMSHIYCNAGRSEDVLRLRKLMRERQLKKLPGHSLV EANRRLHRFLVDSRPRPSWPAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	0	1
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	2.0	0.7957
AT3G51250			Senescence/dehydration-associa...		Lus10041892 [exp]	3.5	0.7785
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	5.5	0.7914
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	9.5	0.7573
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	11.2	0.7780
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	12.4	0.7895
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	17.7	0.7569
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10020905 [exp]	18.5	0.7478
					Lus10000429 [exp]	23.0	0.7133
AT5G36230			ARM repeat superfamily protein...		Lus10018182 [exp]	23.0	0.7487

Compare expression of checked genes

Lus10014746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.