Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55190 118 / 2e-33 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13710 108 / 8e-30 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT1G17700 107 / 5e-29 PRA1.F1 prenylated RAB acceptor 1.F1 (.1) AT1G04260 103 / 9e-28 PRA1.D, MPIP7, MPI7 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) AT3G13720 100 / 1e-26 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G08770 98 / 2e-25 PRA1.E prenylated RAB acceptor 1.E (.1) AT2G40380 95 / 3e-24 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT3G56110 93 / 2e-23 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT2G38360 87 / 3e-21 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT5G01640 86 / 2e-20 PRA1.B5 prenylated RAB acceptor 1.B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033859 [exp] 263 / 4e-90 AT1G55190 149 / 1e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10024861 [exp] 189 / 6e-61 AT1G08770 132 / 2e-38 prenylated RAB acceptor 1.E (.1) Lus10018774 [exp] 186 / 1e-59 AT1G08770 130 / 5e-38 prenylated RAB acceptor 1.E (.1) Lus10021996 [exp] 129 / 2e-37 AT1G08770 162 / 3e-50 prenylated RAB acceptor 1.E (.1) Lus10034363 [exp] 120 / 4e-34 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10005088 [exp] 120 / 5e-34 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10042535 [exp] 114 / 1e-31 AT1G08770 157 / 1e-48 prenylated RAB acceptor 1.E (.1) Lus10015631 [exp] 107 / 7e-29 AT1G55190 193 / 7e-63 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10026404 [exp] 104 / 1e-27 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219100 [exp] 184 / 4e-59 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 159 / 2e-49 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 152 / 2e-46 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.002G043800 [exp] 151 / 4e-46 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.003G035200 [exp] 109 / 6e-30 AT1G55190 161 / 2e-50 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.006G104400 [exp] 99 / 2e-25 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.016G126400 [exp] 98 / 3e-25 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.010G183300 [exp] 96 / 2e-24 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.019G124100 [exp] 91 / 8e-23 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.008G074000 [exp] 83 / 2e-19 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10014747 pacid=23165578 polypeptide=Lus10014747 locus=Lus10014747.g ID=Lus10014747.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTCTTCTTCGTCTCCTCCGCCTCCTATCTCCTACGGCAACGACTCCTTCATATACAACACCCCTGAAGCGTTCCTCTCACGCGCCGCCT CCAATTCCGCCGCCTTCTACGCCACTCGCCGTCAATGGCGCGAGCTCTTCAGCCTCCCCTCCTTCGCCCGCCCTTTCTCCATCAGGGAGGCCTCCGTCCG GATTAAGCGCAACCTCGCATACTTCCGCGTCAATTACGCCATGGCCGTCCTCTTCATCCTCTTTCTCAGCCTCCTCTGGCACCCCTTCGCCCTGATCGTC TTCCTAATCGTCTTCGTCGCTTGGTTCTTCCTTTTCTTCTTCCGCGGAGAGCCTATAGTCGTCTTCGGCCGCACCGTCGACGATCGACTGGTTCTCTGCC TCCTGTCCGTCGTCACGATCGTCTCCTTGGTCTTCACTTCCGGCGTGTGGCTCAACGTGTTGGTTTCCGTATTGGTCGGGCTCGCGATTGTCGTGTTGCA CGCTGCCTTTAGAGGGACTGAGGATTTGTATTCCGATGAGGTGGATGCTGGTGGAGGTGGCGGTGGTGGTTTGTTCTCATTCGTCGGCGGTGGCTCTGCC AATACCGGATATTCTTCCATTTGA
AA sequence Show only first row Show all	>Lus10014747 pacid=23165578 polypeptide=Lus10014747 locus=Lus10014747.g ID=Lus10014747.BGIv1.0 annot-version=v1.0 MASSSSSSPPPPISYGNDSFIYNTPEAFLSRAASNSAAFYATRRQWRELFSLPSFARPFSIREASVRIKRNLAYFRVNYAMAVLFILFLSLLWHPFALIV FLIVFVAWFFLFFFRGEPIVVFGRTVDDRLVLCLLSVVTIVSLVFTSGVWLNVLVSVLVGLAIVVLHAAFRGTEDLYSDEVDAGGGGGGGLFSFVGGGSA NTGYSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10014747 [exp]	0	1
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Lus10030046 [exp]	3.2	0.8970
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10016921 [exp]	5.5	0.8622
AT5G44860			unknown protein		Lus10036220 [exp]	10.6	0.8556
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	11.0	0.8866
AT3G22530			unknown protein		Lus10010549 [exp]	14.7	0.8398
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10033859 [exp]	15.3	0.7636
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	19.1	0.8787
AT5G08060			unknown protein		Lus10017854 [exp]	21.4	0.8433
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	22.2	0.8509
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	29.4	0.8502

Compare expression of checked genes

Lus10014747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.