Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 366 / 6e-124 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 356 / 4e-120 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 100 / 7e-23 RING/U-box superfamily protein (.1) AT5G13250 64 / 8e-11 RING finger protein (.1) AT1G28080 56 / 2e-08 RING finger protein (.1) AT1G03770 49 / 6e-06 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G61140 46 / 4e-05 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT5G44280 43 / 0.0004 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT4G21070 42 / 0.0006 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT3G54360 42 / 0.001 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033860 [exp] 772 / 0 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 255 / 1e-80 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 254 / 2e-80 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10003261 [exp] 232 / 3e-71 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10006558 [exp] 213 / 4e-65 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10041603 [exp] 50 / 5e-06 AT5G06120 1654 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Lus10024116 [exp] 48 / 8e-06 AT3G54360 491 / 8e-175 zinc ion binding (.1) Lus10018609 [exp] 47 / 2e-05 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 47 / 3e-05 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G219000 [exp] 431 / 5e-149 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 417 / 2e-143 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 350 / 4e-117 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 330 / 1e-109 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 321 / 4e-106 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 267 / 2e-85 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 131 / 1e-34 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.004G137200 [exp] 66 / 1e-11 AT5G13250 92 / 9e-21 RING finger protein (.1) Potri.001G062700 [exp] 66 / 2e-11 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 66 / 2e-11 AT5G13250 218 / 1e-67 RING finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10014749 pacid=23165661 polypeptide=Lus10014749 locus=Lus10014749.g ID=Lus10014749.BGIv1.0 annot-version=v1.0 ATGGAGGCGAATCGGATGGTCGTGAAAGTTAGGAGGGAAATGATTGCGGCTTGCTTGACGTGTACTATCTGCAACAGGTTGTTCAGAGACGCCACCACCA TCTCCGAGTGTCTTCATACCTTTTGCAGGAAGTGCATTTATAGGAGGATATCCAATGATGGATTGGAATCATGCCCAATCTGCAACATTGATCTGGGTTG TGTAGCACTCGAGAAATTAAGGGCGGATCACAATTTGCAAGATGTGAGATCAAAGATCTTCCCATTCAAAAGACAAAAGATTGAGGCTCCTGATGTTACA CCTGAAGAGGCATCATCGGTGCCTTCACCGGTGAAAAGAAAGGAGAGATCACTCTCATCATTGGTGGTCAGTGCTCCCAAGGTTTCAATGCAAACCACAA CAACAGGCAGAAGAACCAAACTTGCTCTGAGGAAATGTAGTACTGCTGCAAGAAGCTCTAATGTTCCCTTAGAGAAACCGGTCAAGGAGGATGACCATCC AGAAGGTTGCCCGGAGAGTTCAAGTTCACGAGATATAGAGAGCAACTTAAATAGCAAAAGAAGACAGAGTTCATCTGCTGAGCCAAGTCAATCTGCTTCT AATACTGAAGCACCAAATGGTGCTAATCCATGGGATGGTAAATCTGATCTTTGGCAACCTTTGAACTTTCTAGTGGAAGTTGCAAGTAGAACCAAGTCGT ACAAGACCAATTCACAACTACCTGATGTAAAGTTAGAGTCTATTGATCTCCCTGAAAGTGAACCACCAGTCCGGAAAACTAAATATATAGAAGATGAAGA GAGGTCAAAAGTTGATGAAAAAATCCAGATCACTACCAACTTCCAACAGCTGGAAGAACCAAAGAAGATGCATAGAATCCGACGAAGAAAGCCAGCTCGG AAGGGTATCTCATCTCAAGCTGTCCTATATGCTTCAAGTTCAAAGCAAGAAAGAAGAACTACTCCTGTTTGGTTCTCACTGGTTGCTTCCGATGAACAGG AAGGGGATGCATCTTTGCCACAAATCTCAGCAAACTACTTACAGATAAAGGATGGAACAGTACCTGTTTCCTTCATTCACAAGTACCTGAAAAGGAAACT AGACCTCCTTAGTGAAGAGGAGATTGAGATAAAATGTATGGGAGAACCAGTTATACCAACATCACAACTGCACAGTCTAGTTGATCGGTGGATACAGAAG CAATCATCGGCATCGGAACGAATGAAAGCAAGAGTTGGTTCATCAGCTGAGGAATTCGTGATGGTTCTGGCATACGCTCGTAGAGCAGCATCAGCAGCAG CAGAGCCACCGTAA
AA sequence Show only first row Show all	>Lus10014749 pacid=23165661 polypeptide=Lus10014749 locus=Lus10014749.g ID=Lus10014749.BGIv1.0 annot-version=v1.0 MEANRMVVKVRREMIAACLTCTICNRLFRDATTISECLHTFCRKCIYRRISNDGLESCPICNIDLGCVALEKLRADHNLQDVRSKIFPFKRQKIEAPDVT PEEASSVPSPVKRKERSLSSLVVSAPKVSMQTTTTGRRTKLALRKCSTAARSSNVPLEKPVKEDDHPEGCPESSSSRDIESNLNSKRRQSSSAEPSQSAS NTEAPNGANPWDGKSDLWQPLNFLVEVASRTKSYKTNSQLPDVKLESIDLPESEPPVRKTKYIEDEERSKVDEKIQITTNFQQLEEPKKMHRIRRRKPAR KGISSQAVLYASSSKQERRTTPVWFSLVASDEQEGDASLPQISANYLQIKDGTVPVSFIHKYLKRKLDLLSEEEIEIKCMGEPVIPTSQLHSLVDRWIQK QSSASERMKARVGSSAEEFVMVLAYARRAASAAAEPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10014749 [exp]	0	1
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	5.5	0.8341
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	12.7	0.8096
AT2G40980			Protein kinase superfamily pro...		Lus10037692 [exp]	13.3	0.8159
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	14.6	0.8237
AT5G57100			Nucleotide/sugar transporter f...		Lus10020017 [exp]	23.8	0.8183
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	24.4	0.8055
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	28.5	0.7977
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	30.8	0.8129
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002915 [exp]	40.5	0.7835
AT5G48660			B-cell receptor-associated pro...		Lus10011842 [exp]	43.6	0.7727

Compare expression of checked genes

Lus10014749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.