Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06780 562 / 0 GAUT6 galacturonosyltransferase 6 (.1.2) AT2G30575 528 / 0 GAUT5, LGT5 GALACTURONOSYLTRANSFERASE 5, los glycosyltransferase 5 (.1) AT5G47780 448 / 3e-151 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 430 / 2e-143 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 377 / 6e-123 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G46480 320 / 9e-103 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G25140 291 / 3e-91 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G20810 288 / 3e-90 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G02350 286 / 3e-89 GAUT9 galacturonosyltransferase 9 (.1) AT1G18580 283 / 2e-88 GAUT11 galacturonosyltransferase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033861 [exp] 944 / 0 AT1G06780 568 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10024859 [exp] 741 / 0 AT1G06780 630 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10018773 [exp] 729 / 0 AT1G06780 639 / 0.0 galacturonosyltransferase 6 (.1.2) Lus10038739 [exp] 446 / 1e-149 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 420 / 1e-139 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 414 / 6e-138 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 414 / 3e-136 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10026546 [exp] 383 / 6e-121 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10039119 [exp] 369 / 2e-120 AT5G47780 691 / 0.0 galacturonosyltransferase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218900 [exp] 640 / 0 AT1G06780 690 / 0.0 galacturonosyltransferase 6 (.1.2) Potri.016G001700 [exp] 453 / 1e-152 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 415 / 2e-138 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 415 / 2e-137 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 414 / 3e-137 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 382 / 7e-125 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.004G111000 [exp] 295 / 1e-92 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 294 / 2e-92 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.019G108900 [exp] 292 / 8e-92 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.002G246500 [exp] 289 / 2e-90 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10014750 pacid=23165635 polypeptide=Lus10014750 locus=Lus10014750.g ID=Lus10014750.BGIv1.0 annot-version=v1.0 ATGAAGAAAGCTCGTCAAATGCAGAGGATTATCATCCTCTGTCTCCTCTCTGCCACTGTCGTCGCTCCAATCGTCTTCCTCTCCAATGGCGCCACTTTCC TCGCTACTTTCCGAACTAGAGGGTTTGATCATGACATTTCAAGCCTGAAGTATAGGACAGATTCTTTGGAGCTTCATGCCATTGAGGAGGCAGATGAAGG CTTGGAAGAACCTAAACTTCTTGTTTATCAAGAGGACTTGAGCCAGGTTTCAGGAAATAATCAAGATAGAGAGGCAGAAGTTCAGCACTTGCAGACGTCC AAAACATCATCGTCAAGGTCAGTTGAAGCGAGAAGTTCCAGAGATCGAAAAACAAGACATGCTTCGCAGAAAGAAACAGATAGGAAGATCAAGGAGATAC AAGATAACGTCATTCAAGCTAAAGTGTACTTGAGTCTTTCACCACCTGGAAGCAACACCCACCTAGTGAAACAATTGAGACAGAGGATCAAAGAATTAGA ACGTTATAGTGAAGGCACCAAAGACAAAGATCTACCCAAGAGCGCGCGAAGTAAAATGAAGGCCATGGAATTAACCTTGCTCAAGGCCAACCGAGTCTAC CAAAACTGTGTGGACATTTCCAGAAAGCTCCGAGCCATGACTTACACAGCTGAGGAACAAGTTCGAGCGCATAAAGATGAAGCATCCTATCTTGTAAGGC TTGCAGCAAGAAGTACACCAAAAGGATATCATTGTCTTTCACTCCGCCTAACAGCAGAGTTCTTTGCTATGTCCCCAGATGAGAGACAGTTCCCTAATCA ACATAGATTACATGATCCTCATCTCCACCACTATGCTCTTTTCTCTGACAATATTCTGGCTTGTGCAGTAGTCGTCAATTCTACAGTATCTTCTGCTCAG GAGGAAGAAAAGGTAGTGTTTCATGTGGTGACTAATGCTCTAAATCTCCCGGCAATATCAATGTGGTTCTTGCTATATCCTCCCGGGAAGGCTACGATAT ATGTCGAGAGCATTGAAAAATTTGAGGGGCTGACTGCAAACTACGATTGGATATTGAAGAAGCAAAATTCGAGTGAACCGAGATACACATCAGACTTGAA CCATCTTCGTTTCTATCTACCAGATGTGTTCCCTAAGTTGAAAAAGATTGTGCTTTTGGACCATGATGTTGTGGTGAGGAGAGACCTAGCAGGACTTTGG GGTTTGGATTTGAAAGGGAAGGTCAATGGAGCGGTAGAAACTTGCCATGATGAGAATGATCCTTCTTTTCGTCGCATGGATATGCTCATCAACTTCTCAG ATCCTTATGTTGCAAGGAAATTTAACCCCGGAGCCTGCACCTGGGCATTTGGAATGAATTTGTTTGATCTCAAAGAGTGGAGGAGACGAGCTTTAACTTC CCTCTACCACAAATACTTGCGAATGGGGAGTAAAAGAAGACTATGGAAATCAGGGAGCTTGCCTCTGGGTTGGGCAACTTTCTACAACAGGACGATAGGG ATAGATAGGAGATGGCATCGGCTTCTGGCGCTAGGATACGAGTCAGAAGGTGTCGACGATGACGATAATGTTGAAGATGATGGGATTGAGGAGGCAGCGG TGTTACACTACGATGGAGTGATGAAACCATGGCTGGATATCGGGATATCAAAGTACAGAAGCTACTGGACTGCATTCCTTAATTACGACAACCCCCATTT TCAGCAGTGCAATATCCATGAATGA
AA sequence Show only first row Show all	>Lus10014750 pacid=23165635 polypeptide=Lus10014750 locus=Lus10014750.g ID=Lus10014750.BGIv1.0 annot-version=v1.0 MKKARQMQRIIILCLLSATVVAPIVFLSNGATFLATFRTRGFDHDISSLKYRTDSLELHAIEEADEGLEEPKLLVYQEDLSQVSGNNQDREAEVQHLQTS KTSSSRSVEARSSRDRKTRHASQKETDRKIKEIQDNVIQAKVYLSLSPPGSNTHLVKQLRQRIKELERYSEGTKDKDLPKSARSKMKAMELTLLKANRVY QNCVDISRKLRAMTYTAEEQVRAHKDEASYLVRLAARSTPKGYHCLSLRLTAEFFAMSPDERQFPNQHRLHDPHLHHYALFSDNILACAVVVNSTVSSAQ EEEKVVFHVVTNALNLPAISMWFLLYPPGKATIYVESIEKFEGLTANYDWILKKQNSSEPRYTSDLNHLRFYLPDVFPKLKKIVLLDHDVVVRRDLAGLW GLDLKGKVNGAVETCHDENDPSFRRMDMLINFSDPYVARKFNPGACTWAFGMNLFDLKEWRRRALTSLYHKYLRMGSKRRLWKSGSLPLGWATFYNRTIG IDRRWHRLLALGYESEGVDDDDNVEDDGIEEAAVLHYDGVMKPWLDIGISKYRSYWTAFLNYDNPHFQQCNIHE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10014750 [exp]	0	1
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	4.2	0.6602
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	12.5	0.6389
AT5G59350			unknown protein		Lus10005455 [exp]	25.2	0.6049
AT2G03630			unknown protein		Lus10037082 [exp]	31.1	0.5462
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10002924 [exp]	43.2	0.5840
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024905 [exp]	76.2	0.5541
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10012961 [exp]	82.6	0.5571
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10026691 [exp]	99.0	0.5326
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	124.0	0.5248
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10016368 [exp]	221.5	0.4976

Compare expression of checked genes

Lus10014750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.