Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30570 124 / 2e-37 PSBW photosystem II reaction center W (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033862 [exp] 211 / 1e-71 AT2G30570 137 / 2e-42 photosystem II reaction center W (.1) Lus10024858 [exp] 120 / 6e-36 AT2G30570 132 / 1e-40 photosystem II reaction center W (.1) Lus10018771 [exp] 104 / 2e-30 AT2G30570 100 / 2e-29 photosystem II reaction center W (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G218800 [exp] 139 / 2e-43 AT2G30570 113 / 3e-33 photosystem II reaction center W (.1) Potri.002G044300 [exp] 138 / 8e-43 AT2G30570 120 / 8e-36 photosystem II reaction center W (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07123 [flax] [poplar] PsbW Photosystem II reaction centre W protein (PsbW)
Representative CDS sequence Show only first row Show all	>Lus10014751 pacid=23165592 polypeptide=Lus10014751 locus=Lus10014751.g ID=Lus10014751.BGIv1.0 annot-version=v1.0 ATGGCATCCATCTCCGCCGCCGCATCCTCCTTCGTCGTACAACCACCTCTCCTTCACACTCCCTCCCTGCGCGTCTCATCCGTACCAGTTCTAGGGCTGC CGGCTATGTCTAGGAATAAGGGTAGAGTGGTGAAGTGTTGCGCGAGAAGCAACGGATCAGTGGAAGAGAATATTGAGGAGAAGGGGATGGGAGGTTCATT GATGGCGGCTGCGGCAGTGTGCGCGACGGCCGCGGTGTCGAGCCCGGTGATGGCGCTGGTGGACGACAGGATGAGCACGGAAGGAACCGGGTTGCCGTTC GGGTTGAGCAACAACCTACTCGGGTGGATATTGTTGGGAGTGTTCGGACTCATCTGGTCTCTCTACACCGTCTACACCTCTGGTCTCGACGAGGACGAAG AATCCGGATTGTCCCTCTAA
AA sequence Show only first row Show all	>Lus10014751 pacid=23165592 polypeptide=Lus10014751 locus=Lus10014751.g ID=Lus10014751.BGIv1.0 annot-version=v1.0 MASISAAASSFVVQPPLLHTPSLRVSSVPVLGLPAMSRNKGRVVKCCARSNGSVEENIEEKGMGGSLMAAAAVCATAAVSSPVMALVDDRMSTEGTGLPF GLSNNLLGWILLGVFGLIWSLYTVYTSGLDEDEESGLSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	0	1
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	1.4	0.9626
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031168 [exp]	2.0	0.9609
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014694 [exp]	3.2	0.9380
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10022477 [exp]	3.3	0.9377
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	3.5	0.9468
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	3.9	0.9439
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	4.9	0.9359
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	5.1	0.9355
AT1G19740			ATP-dependent protease La (LON...		Lus10006131 [exp]	5.2	0.9388
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	5.7	0.9410

Compare expression of checked genes

Lus10014751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.