Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58160 1279 / 0 XI-16, MYA3, ATXIJ, ATMYOS3, XIJ MYOSIN XI-16, MYOSIN A3, MYOSIN XI J, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08730 1271 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G54560 1264 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT5G20490 1231 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G17580 1196 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G31900 1187 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT5G43900 1165 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 1159 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT1G04600 1122 / 0 ATXIA, XIA myosin XI A (.1) AT4G28710 1118 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005521 [exp] 1257 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 1224 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10003315 [exp] 1217 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10017160 [exp] 1176 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10022850 [exp] 1169 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10032597 [exp] 1137 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 1116 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10033864 [exp] 1050 / 0 AT1G54560 843 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10009791 [exp] 903 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G041800 [exp] 1366 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1) Potri.019G013800 [exp] 1285 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.013G043900 [exp] 1278 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 1264 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G199200 [exp] 1256 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.001G233100 [exp] 1216 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.009G025300 [exp] 1209 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.002G254300 [exp] 1202 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.008G174500 [exp] 1183 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.006G220000 [exp] 991 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain) CL0010 [flax] [poplar] SH3 PF02736 [flax] [poplar] Myosin_N Myosin N-terminal SH3-like domain
Representative CDS sequence Show only first row Show all	>Lus10014753 pacid=23165650 polypeptide=Lus10014753 locus=Lus10014753.g ID=Lus10014753.BGIv1.0 annot-version=v1.0 ATGGGGGTGCCAGAAAACATTGATGTTGGTTCTCATGTCTGGCTTGAAGATTCTGAACTTGCTTGGGTAGATGGAATTGTATTTAGCGTTAAGGGACATG ACGTTGAGGTTCAAACTAGTGATGGCAGAACTGTTGTGGCGAAGATATCAGAACTACATCCCAGGGATGCAGAATCTCCAGCGGGGGGAGTTGATGACAT GACTAACCTTCACTATTTGAATGAGGCTGAAGTCCTGCACAATCTAGGCACCAGATTCGAGATAGATGAAATCTATACTTACACTGGAAATATCCTTATT GCTGTCAATCCGTTTCAAGACCTTCCACACTTATATGAATCCTCCGTGATGGAGAGATACAAGGGAGCAAAAATGGGAGATGAGACCCCTCATGTTTTCA CCATTGCTGATCTTGCCTACAGGGCAATGATCAATGAAGGCAAGAGCAACTCCATTCTGGTTAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACAACCAA GATGCTCATGCGTTACCTTGCCTTTTTGGGGGGAAATTCTGCTGCTGAAGGGAGGACTGTTGAGCAACAGGTTCTAGAATCAAATCCAGTTCTTGAAGCA TTTGGCAACGCAAAGACTGCTAGAAACAACAATTCCAGCCGTTTCGGGAAATTTGTAGAGATTCAATTTGACAGTTGTGGAAGAATTTCTGGAGCAGCCA TCAGAACTTATCTTCTTGAGAGGTCACGTGTGTGCCAAGTTTCCGATCCTGAGCGTAACTATCACTGTTTTTACCTTTTATGTGCTGCCCCAAAGGAGGA GATTGAGAAGTACAAGTTGGGAAATCCAAAATCATTCCACTATCTTAACCAATCCAATTGCTATGAATTGGTTGGTGTTAATGATGCAAACAATTATCTG GCCACCAGGCGAGCTATGGATATTGTTGGGATAAGTGAGGTGGAACAGGAAGCTATTTTCAGAATCGTCGCTGCTATTCTTCATCTGGGTAACATCGATT TTGGAAATGAGGGGGAGGTTGAATCAGCAGTTCTAAAAGACGAAGCTTCAAAATTTCATCTTCAAATGACGGCAGAGCTTCTCAAGTGCGATCCCCAGTC TTTGGAAGATGCCTTATGTAAGCGTAAGATGATAACACCAGATGATGTTATCAAGAAGAGTCTTGATGCAGGTGGTGCTACTATTAGTAGGGATGGTTTA GCGAAGACTATATATTCTCGTTTATTTGACTGGCTGGTCAACAAAATAAATTCCTCCATTGGGCAAGATCCTAAGTCGAAGTGTCTGATTGGAGTTCTTG ATATTTATGGCTTTGAAAGTTTCGAGTATAATAGTTTTGAACAGTTGTGCATCAATTATACAAATGAAAAGCTGCAGCAACATTTCAACCAGCATGTATT CAAAGGAGAGCAGCTGGAGTACACTAAGGAGGAAATTGATTGGAGATACATTGAATTTGATGATAATCAAGATATCCTCGACCTTATTGAGAAGAAAACA GGTGGGATAATTGCTTTACTTGATGAGGCATGTCTGGTCCCAAAATCAACTCACGAGACATTTGCCCAAAAGCTTTATCAGACATTCAAAGATCACAAGC GGTTCCTAAAGCCAAAATTGGCTCGATCAGAGTTCACCATTGTCCATTATGCAGGAGAGGTCCTCTATCAATCTGAACAATTTTTGGACAAAAACAAAGA CTACGTTGTTCCTGAGCACCAGAATTTGTTGAGTGCTTCTGAATGTTCTTTTATGCAACGCCTTTTTCCTTCGCTGTCCGAGGAAACAACCAAACCGTCC AAATTCTCATCTATTGGTTATAGGTTTAAGCTTCAACTGCAGCAGTTGATGGAGATCTTAAATTCCACAGACCCTCACTTTGTCAGATGTGTGAAGCCAA ATCACGTTTTAAAACCCACCATCTTTGAGAATCAATATGTCATGCAACAACTACGTTCTGGCGGAGTTTTAGAGGCAATCCGAATCAAATGTGCAGGATA CCCTGCCCATAAGACCTTTGAGGAGTTCCTGCATCGATATAGTATTATAGCTCCAGAGGTTTTGAAAGGAAGCTTTGAAGAAAAGGTGGCATGCAAATGG ATACTAGAAAAAACGGAGATTACTGAATATCAGATGGGGTTGACACAAGTGTTCTTGAAAGGCAACCAGATGGCGGAGTTAGATGCTCAGAGGGCAAAAA TGTTACGGAACTCAGCTACAGTCATTCAAAGACGAGTTAAAACTCGTTCGAGCCGTAAAAAGTTTGTTCTCATGCGCCAATCTTCAATCCATATACAATC TCACTGGAGAGGGAAAATGGCACGGAACTCCTATAAGGAAAAGAGAAGAGATGTAGCTGCTGTAAAAATTCAGAAGAATTTGCGTAGGCAAGTTGCTAGG AGGACTTACTCTGAGACGAAGTCCTCTGCAATCATCCTGCAGACTGCTTTACGAGCAATGGCCACACGAGAGCACTTCTATAGAAGATTGGAAACTAAGT CAGCGACGAGAATCCAGGCTATTTGGCGCCGCCGTAGCGCCATTCTTGACTATAAGGAAATGCAAAGAATAACTATGGAAAGAGATGCACTCTTGCGTCA ACAACAACTTGAAGAATCACAACGCGCAGTTGCTGAAGCAGAGGAATTGGCTCGTAAAGCAGAGGAATTGGCTCGCGAAGCTGAGGAAAGTAGATCACAT ACAGCTGAAGAGCAAACTTCTCATGGAGATTCTGACGGCGAAGGAGCTAATCCCGAGGAGGAAAATTGGAAGTTCTTGCTTTGGGCAGAAAAGCAAAGAG CAGATAATGCAGAGAGGAAATACGAGGAATCAGTAGAATTGTGTGAGAGAAGGCGCGTGAAACTAGAAGAAACCGAATACAGGGTTTATCAACTCCAAGC TTCTCTGAATAGGATTGTAACGGTGGTATACTATGCAGGTCCTGAGAAGGCCAAGAGAGGAAAGGACGGGGCATTCGATGACTACTTTTGA
AA sequence Show only first row Show all	>Lus10014753 pacid=23165650 polypeptide=Lus10014753 locus=Lus10014753.g ID=Lus10014753.BGIv1.0 annot-version=v1.0 MGVPENIDVGSHVWLEDSELAWVDGIVFSVKGHDVEVQTSDGRTVVAKISELHPRDAESPAGGVDDMTNLHYLNEAEVLHNLGTRFEIDEIYTYTGNILI AVNPFQDLPHLYESSVMERYKGAKMGDETPHVFTIADLAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGNSAAEGRTVEQQVLESNPVLEA FGNAKTARNNNSSRFGKFVEIQFDSCGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPKEEIEKYKLGNPKSFHYLNQSNCYELVGVNDANNYL ATRRAMDIVGISEVEQEAIFRIVAAILHLGNIDFGNEGEVESAVLKDEASKFHLQMTAELLKCDPQSLEDALCKRKMITPDDVIKKSLDAGGATISRDGL AKTIYSRLFDWLVNKINSSIGQDPKSKCLIGVLDIYGFESFEYNSFEQLCINYTNEKLQQHFNQHVFKGEQLEYTKEEIDWRYIEFDDNQDILDLIEKKT GGIIALLDEACLVPKSTHETFAQKLYQTFKDHKRFLKPKLARSEFTIVHYAGEVLYQSEQFLDKNKDYVVPEHQNLLSASECSFMQRLFPSLSEETTKPS KFSSIGYRFKLQLQQLMEILNSTDPHFVRCVKPNHVLKPTIFENQYVMQQLRSGGVLEAIRIKCAGYPAHKTFEEFLHRYSIIAPEVLKGSFEEKVACKW ILEKTEITEYQMGLTQVFLKGNQMAELDAQRAKMLRNSATVIQRRVKTRSSRKKFVLMRQSSIHIQSHWRGKMARNSYKEKRRDVAAVKIQKNLRRQVAR RTYSETKSSAIILQTALRAMATREHFYRRLETKSATRIQAIWRRRSAILDYKEMQRITMERDALLRQQQLEESQRAVAEAEELARKAEELAREAEESRSH TAEEQTSHGDSDGEGANPEEENWKFLLWAEKQRADNAERKYEESVELCERRRVKLEETEYRVYQLQASLNRIVTVVYYAGPEKAKRGKDGAFDDYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10014753 [exp]	0	1
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10035815 [exp]	4.6	0.8495
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10007970 [exp]	7.9	0.8427
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	10.5	0.7876
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	17.6	0.8323
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019588 [exp]	22.4	0.8464
AT2G33360			Protein of unknown function (D...		Lus10023729 [exp]	23.7	0.7237
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	28.5	0.8325
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	30.0	0.8010
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10030522 [exp]	31.9	0.8239
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	33.3	0.8277

Compare expression of checked genes

Lus10014753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.