Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11010 416 / 7e-143 Pre-mRNA cleavage complex II protein family (.1.2.3) AT3G58170 95 / 3e-23 ATBET11, ATBS14A ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) AT4G14455 70 / 2e-14 ATBS14B ,ATBET12 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) AT3G04680 64 / 8e-11 CLPS3 CLP-similar protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033124 [exp] 629 / 0 AT5G11010 473 / 7e-168 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10036655 [exp] 624 / 0 AT5G11010 467 / 2e-165 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033870 [exp] 196 / 1e-59 AT5G11010 142 / 9e-41 Pre-mRNA cleavage complex II protein family (.1.2.3) Lus10033868 [exp] 102 / 2e-25 AT3G58170 187 / 1e-62 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Lus10033869 [exp] 104 / 3e-23 AT3G57170 464 / 4e-156 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1) Lus10003249 [exp] 96 / 2e-21 AT3G57170 53 / 2e-08 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1) Lus10024876 [exp] 93 / 2e-19 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10021879 [exp] 73 / 3e-15 AT4G14455 110 / 4e-32 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Lus10041158 [exp] 73 / 7e-15 AT4G14455 164 / 6e-53 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073500 [exp] 521 / 0 AT5G11010 480 / 2e-170 Pre-mRNA cleavage complex II protein family (.1.2.3) Potri.005G221600 [exp] 98 / 3e-24 AT3G58170 206 / 4e-70 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.002G041500 [exp] 97 / 5e-24 AT3G58170 202 / 7e-69 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14A, BET1P/SFT1P-like protein 14A (.1) Potri.006G044500 [exp] 82 / 4e-16 AT3G57170 470 / 1e-158 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein (.1) Potri.010G074100 [exp] 74 / 1e-15 AT4G14455 147 / 1e-46 ARABIDOPSIS THALIANA BET1P/SFT1P-LIKE PROTEIN 14BB, Target SNARE coiled-coil domain protein (.1) Potri.017G077200 [exp] 69 / 3e-12 AT3G04680 655 / 0.0 CLP-similar protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06807 [flax] [poplar] Clp1 Pre-mRNA cleavage complex II protein Clp1 CL0023 [flax] [poplar] P-loop_NTPase PF03205 [flax] [poplar] MobB Molybdopterin guanine dinucleotide synthesis protein B
Representative CDS sequence Show only first row Show all	>Lus10014756 pacid=23165571 polypeptide=Lus10014756 locus=Lus10014756.g ID=Lus10014756.BGIv1.0 annot-version=v1.0 ATGACATCATCAATTCCAGTATCGGCGCCGGAACAGCCTTCATCGTCCCCGACCATATGCATTCCAGACGAGTGGGCGGCGGCTGGAGACACTATTGCCT ACGACTCCGACACCAGTCTTCCTCCTATCGCCCTTATTTGTGGCGCCAAAAACTGTGGCAAAACCACCTTCTCTCGCTACCTCATCAACGTTCTTCTCCG CAGATATAGAAGGGTGGCATACTTGGACACCGATGTTGGGCAACCTGAGTTTACTACTCCTGGTTTCTTATCCCTAACGGTGGTTGATGAACTAACTCCA GATTTGACGATTCCCTGCTTAAAGAGACCTGAGAGATGCTTTTTCTTTGGCGACACTAGTTCAAAACGGGATCCTACAAGCTACCTGAAGTATATATCTG CACTTCATGATTACTACCGCAAGGAATACTGTACTGATGATATTACTGATAGTAGAGGGTTGCCTCTTGTAGTCAACACACCTGGCTGGGTGAAGGGCAT TGGTTATGATATACTGGTGGACATGTTGAGATATATTTCTCCCACTCATGTGGTCAAGATAGATACTTTTTCAGCTAGAAAGAATCTACCAGTTGGGAGA TTTTGGTTAGCTTGTGATGCTGACTCGGAGGTTAATCTGATTGAAATTTGTTCAGCTAATCAGGGTTCTTCCAATAGATCGGTGTTTGTGAAAAAGGATG CACATCTTTTGCGGGATCTGCGAATAATGGCATATTTCAGACAATGCTTTCCTGGTACCTTGAAGGTTAATACAATCAAGGAACTTGCAAATGCCCTTGC TTCACATCCCCCGTACCAAGTTCCTTTATCGAGTGTTAAGATCAGACATCTCTATTGCCAGGTCCCTCAAATGGAAGTCTTCTACAGTTTGAATGCTACT ATTGTTGGTCTGGCTAAAAATTCTGAGCAGGCAGGAACTCTACCATGGTGTGTAGGTCTCGGGATTGTGAGAGGAATCGATACTGTCAAAGGGTTACTGT ACATAATCACACCAGTTCCACAGAGCACTCTGGAAAATGTTGATCTACTACTGCAGGGATTTATCGAGATACCTACTTGTTTGTTGCAGCTAAATTGTTC ATTTCCTAGGCTTCTGTGTGGACTACCTATCTCTTCAATTCCACGTCACTTGCTTTCCTTTCAGGAAATCATCCATGATACAAATGGAAGGATGCCTGTG TGCCTACAGGAGCAGTCATGTTTCTGTCTTCTGGGTCAATGCTTCACACCCTTGAACATCAATGGTGAAAGCCGTAATGCTAGTGACAAATCTGGTGGAT GCAGGATTCCTCAGTTGCATCATCTTCACTGGAAAGGAAAAGAAGTAGTTGAATGCAATGTTCACGTAATACTCTATGATATTCCTGTCTATGGTGAACA ACACTTTACAATGAACCATAGGACTTCTCCTCCAAGAAAGCGGAGGCTAGGCAATGATATGGATGCATCCAGAGGAGTCCTGTCAGGAACGATGGATCGT TTCAAGACGGTATTTGAAACGAAATCGAGCAGGAGAATGGCTACGCTGGTGGCATCATTTGTGGTGCTATTCCTGATTGTGCATTATCTAACTCGGTGA
AA sequence Show only first row Show all	>Lus10014756 pacid=23165571 polypeptide=Lus10014756 locus=Lus10014756.g ID=Lus10014756.BGIv1.0 annot-version=v1.0 MTSSIPVSAPEQPSSSPTICIPDEWAAAGDTIAYDSDTSLPPIALICGAKNCGKTTFSRYLINVLLRRYRRVAYLDTDVGQPEFTTPGFLSLTVVDELTP DLTIPCLKRPERCFFFGDTSSKRDPTSYLKYISALHDYYRKEYCTDDITDSRGLPLVVNTPGWVKGIGYDILVDMLRYISPTHVVKIDTFSARKNLPVGR FWLACDADSEVNLIEICSANQGSSNRSVFVKKDAHLLRDLRIMAYFRQCFPGTLKVNTIKELANALASHPPYQVPLSSVKIRHLYCQVPQMEVFYSLNAT IVGLAKNSEQAGTLPWCVGLGIVRGIDTVKGLLYIITPVPQSTLENVDLLLQGFIEIPTCLLQLNCSFPRLLCGLPISSIPRHLLSFQEIIHDTNGRMPV CLQEQSCFCLLGQCFTPLNINGESRNASDKSGGCRIPQLHHLHWKGKEVVECNVHVILYDIPVYGEQHFTMNHRTSPPRKRRLGNDMDASRGVLSGTMDR FKTVFETKSSRRMATLVASFVVLFLIVHYLTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10014756 [exp]	0	1
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	3.5	0.7690
AT1G18070			Translation elongation factor ...		Lus10018000 [exp]	3.9	0.7707
AT5G14030			translocon-associated protein ...		Lus10041525 [exp]	7.1	0.7277
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	9.3	0.8064
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10024888 [exp]	10.9	0.8010
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	17.1	0.7893
AT1G66590		ATCOX19-1	A. THALIANA CYTOCHROME C OXIDA...		Lus10025812 [exp]	23.2	0.7377
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	29.5	0.7832
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000949 [exp]	32.5	0.7450
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	34.8	0.6834

Compare expression of checked genes

Lus10014756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.