Plant FIBer expression Database

Lus10014758 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61460 71 / 5e-17 BRH1 brassinosteroid-responsive RING-H2 (.1)
AT1G63840 58 / 5e-12 RING/U-box superfamily protein (.1)
AT5G41400 48 / 2e-08 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036378
[exp]
111 / 2e-32 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1)
Lus10032290
[exp]
59 / 2e-12 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1)
Lus10024657
[exp]
59 / 2e-12 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G161900
[exp]
75 / 9e-19 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1)
Potri.014G087700
[exp]
73 / 5e-18 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1)
Potri.003G130900
[exp]
61 / 4e-13 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1)
Potri.001G101000
[exp]
41 / 1e-05 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1)
PFAM info
Representative CDS sequence
>Lus10014758 pacid=23150232 polypeptide=Lus10014758 locus=Lus10014758.g ID=Lus10014758.BGIv1.0 annot-version=v1.0
ATGGGGTTTCCGATCGCATACACCGAGGTTTTCATGCCGAAGATCTTCGTCCATGCGCTTTCCTTCCTCGGATTCCTCCGTACCGCAATCATTTCTCTCT
TCACCGTCCTCGGCCTCTCCGACTTCATCGAAGCTGCCGCCGACAACATCTGGCAGCAGGACTACTACTCGCAGCCGCCGTCCACGGCGGCCTGTGAGGA
GCGGACGAGATCAGGTGGCTGA
AA sequence
>Lus10014758 pacid=23150232 polypeptide=Lus10014758 locus=Lus10014758.g ID=Lus10014758.BGIv1.0 annot-version=v1.0
MGFPIAYTEVFMPKIFVHALSFLGFLRTAIISLFTVLGLSDFIEAAADNIWQQDYYSQPPSTAACEERTRSGG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61460 BRH1 brassinosteroid-responsive RIN... Lus10014758
[exp]
0 1
AT3G61460 BRH1 brassinosteroid-responsive RIN... Lus10036378
[exp]
1.0 0.9623
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10015496
[exp]
3.2 0.9078
AT3G07790 DGCR14-related (.1) Lus10006367
[exp]
4.5 0.8958
AT3G25780 AOC3, AOC2 allene oxide cyclase 3 (.1) Lus10017571
[exp]
4.6 0.9061
AT1G04000 unknown protein Lus10008237
[exp]
6.3 0.8689
AT1G02816 Protein of unknown function, D... Lus10009854
[exp]
6.7 0.8942
AT1G07710 Ankyrin repeat family protein ... Lus10024440
[exp]
6.7 0.8826
AT3G07360 ATPUB9 ARABIDOPSIS THALIANA PLANT U-B... Lus10025885
[exp]
8.4 0.8738
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Lus10034499
[exp]
8.8 0.8740
AT5G13860 ELC-LIKE, ATELC... ELCH-like (.1) Lus10041612
[exp]
9.9 0.8806

Lus10014758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.