Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41390 307 / 4e-101 PLAC8 family protein (.1.2) AT1G63830 304 / 1e-100 PLAC8 family protein (.1.2.3) AT4G23470 297 / 8e-98 PLAC8 family protein (.1.2.3) AT3G09740 295 / 3e-96 ATSYP71, SYP71 syntaxin of plants 71 (.1) AT3G61450 262 / 1e-83 ATSYP73, SYP73 syntaxin of plants 73 (.1.2) AT3G45280 253 / 4e-80 ATSYP72, SYP72 syntaxin of plants 72 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036377 [exp] 699 / 0 AT3G09740 347 / 8e-117 syntaxin of plants 71 (.1) Lus10018826 [exp] 352 / 1e-117 AT4G23470 328 / 2e-113 PLAC8 family protein (.1.2.3) Lus10017509 [exp] 310 / 2e-102 AT1G63830 379 / 1e-134 PLAC8 family protein (.1.2.3) Lus10023178 [exp] 296 / 1e-96 AT3G09740 416 / 1e-148 syntaxin of plants 71 (.1) Lus10019925 [exp] 292 / 7e-95 AT3G09740 419 / 2e-149 syntaxin of plants 71 (.1) Lus10026495 [exp] 287 / 6e-93 AT3G09740 408 / 5e-145 syntaxin of plants 71 (.1) Lus10015075 [exp] 286 / 7e-93 AT3G09740 417 / 3e-149 syntaxin of plants 71 (.1) Lus10028774 [exp] 283 / 2e-91 AT1G63830 350 / 1e-122 PLAC8 family protein (.1.2.3) Lus10036118 [exp] 274 / 5e-88 AT3G45280 363 / 3e-127 syntaxin of plants 72 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G087600 [exp] 330 / 3e-110 AT5G41390 327 / 8e-114 PLAC8 family protein (.1.2) Potri.003G130700 [exp] 323 / 1e-107 AT1G63830 341 / 1e-119 PLAC8 family protein (.1.2.3) Potri.001G101100 [exp] 320 / 3e-106 AT1G63830 353 / 2e-124 PLAC8 family protein (.1.2.3) Potri.014G087400 [exp] 285 / 1e-92 AT3G09740 352 / 2e-123 syntaxin of plants 71 (.1) Potri.006G129500 [exp] 280 / 9e-91 AT3G09740 377 / 3e-133 syntaxin of plants 71 (.1) Potri.016G088200 [exp] 273 / 4e-88 AT3G09740 384 / 3e-136 syntaxin of plants 71 (.1) Potri.002G161801 [exp] 40 / 0.0003 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10014759 pacid=23150198 polypeptide=Lus10014759 locus=Lus10014759.g ID=Lus10014759.BGIv1.0 annot-version=v1.0 ATGAGCGTGATCGATTTGATAACCAGAGTCGACTCCATTTGCCGCAAGTTCGATAAGTACGATGTGGATAAGCAGACTGAGCTCAACGTCACCGGCGAAG ATGCCTACGCGCGCCTCTACTCCACGATCGAGGCCGAGCTAGACTCCACTATCCAGAAAGCGGATTCCGTTGCTTCGGCGAAGAATAGGGCTGCCGTTGT TGCTATTAATGCTGAGATTCGGAGGACTAAGGCTCGGTTGCTTGACGACATTCCAAAATTGCAGAGACTTGCTATGAAAAAGGTCAGAGGGCTTTCAATT GAAGAGATGGAGGCTCGCAGTGATTTAGTTTCTGCACTCAAAGACAGGATTGCTTCCGTACCAGATGGATCCTCCACTGCAGCTCAACAAAGTAGCAATG GTGGAGGAGCTTCAGCATCTTCTACAGGAATTAAGTTTAATTCTAACTTTGGTAATCAATTGATGAATTTCCTATGTGATACTGATCAAGGTTTAGATTT TATAGCTGAAGGGCTGGACACTCTAAAGGACATGGCGCACGATATGAATGAGGAACTGGATAGACAAGTACCTTTGATAGATGAAATCGATGACAAGGTT GATAAAGCAGCGTCTGACCTCAGAAGTACAAATGTCAGACTGAAAGATACTGTTAACCAGCTAAGGTCCAGTCGCAACTTTTGCATCGACATCGTCCTCT TGTGCATCGTTCTGGGCATTGCTGCCTATTTGTACAAATTTCCTCGTGATCCAGCGAGCATCTCTCGTTTGTACCTCCGTAGCAGCGCGTCGCCGTCGGC GGGGATTAGGAAGAAGATGACTTATTCCGATGAGAAGGCGGCGCAAATGCAGTTGCGCCAGAATTACAGGAATCTCTGGCACACCGATCTCTGCGGTGCC GTCGGCGCCGATGCTCCCTTTTGCTGTTTTGCGACGGTCTGCGGGCCATGCGCTTCCTACATCCTGCGGAAACGAGCTCTTTACAATGACTTATCAAGGT ACACTTGCTGCGCTGGATACATGCCTTGCAGTGGCAACTGTGGAGAGAGAAACTGCCCTGAGTTCTGTCTTTGCTCCGAGGTGTTGTGCTGCTTTTCGAA TTCGGTAGCCTCGACCCGATTCCTGTTGCAAGATGAATTCAACATCCAGACATCAACCTGTGACAACTGCATCATTGGGTTCATGTTCTGCCTACAGCAG TTGGCCTGCATATGTTCATGCGTAGCCTGCTTAACTGGGATTGATGAAATAGCTGACCTTGCTGACCTCTTGACTTGCCTCTCTGATCTCGTCTTCTGCT CCGTTTGTCCATGTCTTCAGACTCAACACAAAGTTGAGATGGATCAAAGGGACATGAAGTATGGACCTCCACCAACGATGGGGGTTCCTCCAATGCAACA GATGTCAAGAATTGACCAGCCTATCCCTCCTTCTGCAAACAACTATTACTCACCATATGAAGAGGATCTCAAGGCCAAGAGTGGTCCAATGAGTCAACCT CCTCCACCCTATCCGGGCGCAGGATATCCGTATGGAGGATATCCTTCTCCGGGATCGGGATACGGTCCTCCTCCTCCAGGAACGGGATATGGTCCTCCTC CGCCTGGATATCCTTATCCCGGATCTTACCAGGGATATCCTCCGCCGGGATACATTAATCAATCCCCGGGATACCCTCCTTCGTATCCGCCACCTCCTTC TGCTTATCCTCCGCCTAATTACACTAACAACAACCACGACGACAACAAAAAGTGA
AA sequence Show only first row Show all	>Lus10014759 pacid=23150198 polypeptide=Lus10014759 locus=Lus10014759.g ID=Lus10014759.BGIv1.0 annot-version=v1.0 MSVIDLITRVDSICRKFDKYDVDKQTELNVTGEDAYARLYSTIEAELDSTIQKADSVASAKNRAAVVAINAEIRRTKARLLDDIPKLQRLAMKKVRGLSI EEMEARSDLVSALKDRIASVPDGSSTAAQQSSNGGGASASSTGIKFNSNFGNQLMNFLCDTDQGLDFIAEGLDTLKDMAHDMNEELDRQVPLIDEIDDKV DKAASDLRSTNVRLKDTVNQLRSSRNFCIDIVLLCIVLGIAAYLYKFPRDPASISRLYLRSSASPSAGIRKKMTYSDEKAAQMQLRQNYRNLWHTDLCGA VGADAPFCCFATVCGPCASYILRKRALYNDLSRYTCCAGYMPCSGNCGERNCPEFCLCSEVLCCFSNSVASTRFLLQDEFNIQTSTCDNCIIGFMFCLQQ LACICSCVACLTGIDEIADLADLLTCLSDLVFCSVCPCLQTQHKVEMDQRDMKYGPPPTMGVPPMQQMSRIDQPIPPSANNYYSPYEEDLKAKSGPMSQP PPPYPGAGYPYGGYPSPGSGYGPPPPGTGYGPPPPGYPYPGSYQGYPPPGYINQSPGYPPSYPPPPSAYPPPNYTNNNHDDNKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10014759 [exp]	0	1
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	2.6	0.7507
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	8.1	0.6699
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	14.4	0.7113
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	26.7	0.6571
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	28.0	0.6517
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	38.4	0.6368
AT3G49720			unknown protein		Lus10011564 [exp]	40.8	0.6657
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10030703 [exp]	41.1	0.6694
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10007201 [exp]	41.7	0.6552
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	50.9	0.6359

Compare expression of checked genes

Lus10014759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.