Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00350 702 / 0 MATE efflux family protein (.1) AT4G25640 574 / 0 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT4G00330 432 / 2e-141 CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) AT1G47530 431 / 6e-140 MATE efflux family protein (.1) AT1G12950 423 / 1e-136 RSH2 root hair specific 2 (.1) AT5G38030 412 / 7e-133 MATE efflux family protein (.1) AT1G23300 410 / 7e-132 MATE efflux family protein (.1) AT3G26590 405 / 4e-130 MATE efflux family protein (.1) AT5G65380 363 / 2e-114 MATE efflux family protein (.1) AT3G21690 359 / 2e-112 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036374 [exp] 898 / 0 AT4G00350 749 / 0.0 MATE efflux family protein (.1) Lus10036376 [exp] 749 / 0 AT4G00330 474 / 1e-166 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10027504 [exp] 625 / 0 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10039263 [exp] 616 / 0 AT4G25640 691 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 602 / 0 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10018828 [exp] 565 / 0 AT4G00330 471 / 2e-165 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10017787 [exp] 556 / 0 AT4G00330 471 / 1e-163 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Lus10042130 [exp] 428 / 8e-139 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 418 / 4e-135 AT1G47530 665 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G161200 [exp] 603 / 0 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 554 / 0 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 542 / 0 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.014G087200 [exp] 520 / 1e-174 AT4G00330 488 / 7e-172 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.002G161600 [exp] 518 / 3e-174 AT4G00330 479 / 2e-168 calmodulin-binding receptor-like cytoplasmic kinase 2 (.1) Potri.019G063500 [exp] 432 / 7e-140 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 414 / 4e-133 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 387 / 4e-123 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 382 / 2e-121 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 377 / 1e-119 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10014760 pacid=23150180 polypeptide=Lus10014760 locus=Lus10014760.g ID=Lus10014760.BGIv1.0 annot-version=v1.0 ATGGCGGTTCTTCAATCCGAATTCTCCCCATTGTCGATTGAAGATGCCCCCAAGACCACCACCGGTTACTCGTCGTACAACGCTGATGACGACGACACCG CTCCTCTGGCGGATCTACACCATGCTCCTTCCAAGTTGGTTTTGGACGAAGGCGGAGATTACCCACCTGTAAACGGTTTTCAGGATGCGAAATCCATTCT TGTCCTCGAATCAGGCAAGCTCTGGGGAATTGCTGGTCCCATTGCTTTCAATATCCTCTGCAATTATGGAGTTAATTCCTTTACCAATATCTTTGTTGGC CATATCGGAGACGTTGAGCTCTCCGCCGTTGCCATTTCCCTCTCCGTTATTGCAAACTTCTCTTTCGGATTCCTGCTTGGGATGGGAAGTGCATTGGAGA CACTATGCGGGCAAGCATTTGGAGCTGGCCAAGTTCATTTGCTGGGAGTTTACATGCAACGCTCCTGGCTAATCTTGCTCGGGGCTTGCTTTTTTATATT GCCACTCTATCTCTACGCCACACAAATCCTGAACCTCCTCGGAATTGAGCCGGACATTTCTGATCTAGCTGGTAGATTCACAATCCAAGTGATCCCCCAA ATGTTCTCCCTGGCACTCAATTTCCCTACACAGAAGTTTCTGCAGTCTCAGAGCAACGTTGGAGTTCTGGCCTGGATTGGTTTCGCAACTCTGGTTGTAC ATATCATCCTCCTCTATTTCTTCATCCACGTTTTCCATTGGGGATTGACTGGTGCAGCTGCAGCTTACAACATCTCGGCTTGGGGGTTGGCTTTGGCTCA GGTGGTTTATGTGGTTGGCTGGTGCAAGGAAGGTTGGACCGGGTTGTCATGGCTAGCGTTCAAGGACCTCTGGGGATTCTTGAAACTTTCTGTTGCTTCA GCCGTCATGATATGTTTGGAGATTTGGTATTTTATGGTTCTTATTGTTCTTACTGGCCACCTTGAAGATCCTGTCATTGCAGTCGGTTCCCTTTCTATCT GCATGAACATCAATGGCTGGGAAGGGATGCTCTTTATTGGGATCAATGCAGCTATAAGTGTTCGTGTCTCAAACGAGCTTGGATCAGGACATCCGAGAGC TACAAAGTACGCGGTAATGGTCACCTGCACCGAGTCTCTCCTCATAGGCTTACTCAGCGCAGGCGTAATTCTGGCAACCAGAGAAGATTTTGCCGTAATT TTCACAAACAGCGTTGAGATGAGGAAAGCAGTTGCAGACTTAGCATACCTTCTTGGGATAACAATGGTCCTTAACAGCATCCAGCCAGTCATTTCAGGAG TTGCTGTTGGAGGAGGCTGGCAAGCTTTGGTGGCTTACATAAACTTGTTCTGTTATTATGTCGTTGGCCTTCCTCTTGGATTTTTGCTTGGCTATAAAAC AAGCTTGCATGTTAAAGTTGAGGAAGCATCAGAAAGAATGAAGAGATGGGGTGCTGCAAATGAATCAATGATATCTGATGGTGTAAGACCGGATCGGATT GCCTTTCTTGGTATTCTATCTGCTTGTAGTCAAGCGGGGTTAGTGAATGAGGGGATTCATTACTTTAACCAGATGAGTAACCAGTATCAGCTTATCCCGG GTAGAGAACACTATAGTTGTCTAGTTGACCTTCTTGGTCGAGCTGGTTTCCTGGCTGATGCATTTAAGGTTTTGAAATCAATTCCATTCCAACATGGGTC AGATGCGTGGGGTGCTTTCCTTGGTGCTTGCAATATCCATGGAGATTTAGGGTTAGCTAAATCAGCTGCAGAAGTGCTTTTCAAATTGGAGCCAAATGAT CCAGTTAGCTATGCTCTTATACCCAACATGTATGCTTCTGGCGGTCAGTGGACTGAAGTGGCAAAGCTACGCAAACTGTTAAAGGAGAATTGTGAGTACA AACTTCCGGGTTGTAGTTGGACAGAGCCAGCTGCTTTGAAATGGCAACGGAGTTTTGGCTGGCAAGCTGTCAGCTTTTGGCAAAAACCTTGGAGCAGTGA TCCTGTCTTTCTGCAAATGAAAAGTCCATACAGTCACCGGAGCTCTAGCTCGAGCTCCGGATCACGCTCCTCCACCGCTGCAAGCCTCCTCCCTCCTTAC TCTCCGGCCTACTCCCAACCATCCGTCGTCAAGAAGAAACGGAGTCCGGCTGCCAAGGCCGTTAGATCGGTCGTCGGAATCTTCACGTCTTGCTTGACTC CGCCAGAGCCTGAAGGCTTTAGGAGCTTTGCTGACTCCGATGACGCCAAATCTCGTTCTGTTACGTCCAATGCTTCAGGAGCCAGTGCAGGAAATAGACG GGGCTCAACGGATAATAAACAAGGGCCTGGGAGTATGAAATTCACAATTGAAGAACTCTACAGAGCCACAAAGCAATTCTCGCCTTCCTTTAAGATCGGT CAAGGCGGGTTTGGAACTGTCTACAAAGGGAAGCTTGTCAATGGAACTGTTGTTGCCATCAAACGTGCCAAGAAGAGCGTGTATGATAAGCATTTAGGAA TGGAGTTTCTAAGCGAAGTTAGGACGCTGGAAAAAATAGAGCATTTGAATTTAGTGAAGTTCTTTGGGTATTTACAGCATGAGGATGAAAAGATTCTCGT TGTTGAGTATGTCCCTAATGGAACTCTCAGGGAGCATCTGGATTGTATCCATGGATCTGCCCTTGACCTTTCAGTCCGCCTAGATATTGCCATTGATGTA GCTCATGCAATCACTTATCTTCACATGTACACAGGTGGGGAGAAACTGAAGGACTCATGGAATGTTGATGTAGATCATCCAATTATTCACAGGGACATAA AGTCATCCAACATTCTCTTAACTGACAAATGTCGAGCCAAGGTCGCTGATTTCGGGTTCGCTAGACTGGCAGCTGATACCGAATTAGGTGCTACTCACGT TTCCACCCAAGTAAAAGGAACAGCAGGTTACTTGGACCCAGAATACCTCCAGACTTATCAGCTTACCGAGAAGAGCGATGTCTATTCATTTGGCGTCCTC CTGGTCGAGCTTGTAAGTGGCAGGCGCCCTGTGGAACCCAAACGAGATCCCAAGGAGCGCATCACAGCCAGATGGGCAATGAAGAAGTTCAGCGAAGGGA GTGCAAGTTCGATATTGGACCCGAAGTTGGAACACAATGATGCGAATCACTTGGTGCTCGAAAAGGTTCTAGAGCTAGCACTGTTGCAGTGTCTGGCTCC TCGCAGACAGAACCGACCAACTATGAGGAAGTGTGCGGAGATCCTATGGAGCATTAGAAAGGATTACAAAGAACTCTCAGCGCTTGAGACACCTTCACTA CTTTCTTGGAACTCGCGAGGGAGCTCTGAATAA
AA sequence Show only first row Show all	>Lus10014760 pacid=23150180 polypeptide=Lus10014760 locus=Lus10014760.g ID=Lus10014760.BGIv1.0 annot-version=v1.0 MAVLQSEFSPLSIEDAPKTTTGYSSYNADDDDTAPLADLHHAPSKLVLDEGGDYPPVNGFQDAKSILVLESGKLWGIAGPIAFNILCNYGVNSFTNIFVG HIGDVELSAVAISLSVIANFSFGFLLGMGSALETLCGQAFGAGQVHLLGVYMQRSWLILLGACFFILPLYLYATQILNLLGIEPDISDLAGRFTIQVIPQ MFSLALNFPTQKFLQSQSNVGVLAWIGFATLVVHIILLYFFIHVFHWGLTGAAAAYNISAWGLALAQVVYVVGWCKEGWTGLSWLAFKDLWGFLKLSVAS AVMICLEIWYFMVLIVLTGHLEDPVIAVGSLSICMNINGWEGMLFIGINAAISVRVSNELGSGHPRATKYAVMVTCTESLLIGLLSAGVILATREDFAVI FTNSVEMRKAVADLAYLLGITMVLNSIQPVISGVAVGGGWQALVAYINLFCYYVVGLPLGFLLGYKTSLHVKVEEASERMKRWGAANESMISDGVRPDRI AFLGILSACSQAGLVNEGIHYFNQMSNQYQLIPGREHYSCLVDLLGRAGFLADAFKVLKSIPFQHGSDAWGAFLGACNIHGDLGLAKSAAEVLFKLEPND PVSYALIPNMYASGGQWTEVAKLRKLLKENCEYKLPGCSWTEPAALKWQRSFGWQAVSFWQKPWSSDPVFLQMKSPYSHRSSSSSSGSRSSTAASLLPPY SPAYSQPSVVKKKRSPAAKAVRSVVGIFTSCLTPPEPEGFRSFADSDDAKSRSVTSNASGASAGNRRGSTDNKQGPGSMKFTIEELYRATKQFSPSFKIG QGGFGTVYKGKLVNGTVVAIKRAKKSVYDKHLGMEFLSEVRTLEKIEHLNLVKFFGYLQHEDEKILVVEYVPNGTLREHLDCIHGSALDLSVRLDIAIDV AHAITYLHMYTGGEKLKDSWNVDVDHPIIHRDIKSSNILLTDKCRAKVADFGFARLAADTELGATHVSTQVKGTAGYLDPEYLQTYQLTEKSDVYSFGVL LVELVSGRRPVEPKRDPKERITARWAMKKFSEGSASSILDPKLEHNDANHLVLEKVLELALLQCLAPRRQNRPTMRKCAEILWSIRKDYKELSALETPSL LSWNSRGSSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00350			MATE efflux family protein (.1...		Lus10014760 [exp]	0	1
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10008590 [exp]	2.0	0.8988
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10028212 [exp]	4.8	0.9043
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10013040 [exp]	5.7	0.8859
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	15.9	0.8977
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005709 [exp]	17.0	0.8916
AT1G49740			PLC-like phosphodiesterases su...		Lus10014072 [exp]	17.8	0.8321
AT1G61240			Protein of unknown function (D...		Lus10038303 [exp]	18.7	0.8063
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	20.1	0.8963
AT3G47510			unknown protein		Lus10019094 [exp]	20.2	0.8428
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	21.1	0.8937

Compare expression of checked genes

Lus10014760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.