Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11400 207 / 6e-59 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT2G46040 196 / 7e-55 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 114 / 2e-26 GYRB3 DNA GYRASE B3 (.1) AT2G03470 87 / 5e-18 MYB ELM2 domain-containing protein (.1.2) AT1G26580 87 / 1e-17 unknown protein AT1G13880 81 / 4e-16 ELM2 domain-containing protein (.1) AT1G20910 48 / 1e-05 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT1G76510 44 / 0.0003 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036373 [exp] 1062 / 0 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10007943 [exp] 204 / 5e-63 AT4G11400 50 / 3e-08 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10024636 [exp] 130 / 4e-32 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032272 [exp] 123 / 6e-31 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10004658 [exp] 89 / 3e-18 AT1G26580 243 / 1e-74 unknown protein Lus10000680 [exp] 86 / 2e-17 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10026655 [exp] 85 / 3e-17 AT1G26580 237 / 3e-72 unknown protein Lus10037097 [exp] 83 / 2e-16 AT1G26580 249 / 4e-76 unknown protein Lus10036888 [exp] 82 / 4e-16 AT1G26580 253 / 1e-77 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G086700 [exp] 419 / 6e-139 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 397 / 2e-130 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 259 / 1e-77 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 201 / 6e-59 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.017G091900 [exp] 89 / 2e-18 AT1G26580 218 / 2e-65 unknown protein Potri.010G159700 [exp] 87 / 9e-18 AT1G26580 253 / 1e-77 unknown protein Potri.004G118400 [exp] 85 / 3e-17 AT1G26580 219 / 2e-65 unknown protein Potri.008G094400 [exp] 79 / 4e-15 AT1G26580 280 / 3e-88 unknown protein Potri.002G003700 [exp] 47 / 4e-05 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.005G257300 [exp] 44 / 0.0002 AT1G76510 221 / 1e-68 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0123 [flax] [poplar] PF01448 [flax] [poplar] ELM2 ELM2 domain
Representative CDS sequence Show only first row Show all	>Lus10014762 pacid=23150176 polypeptide=Lus10014762 locus=Lus10014762.g ID=Lus10014762.BGIv1.0 annot-version=v1.0 ATGGCAGGGTGGTCGGGGATAGAGGTGGATGAGCACAAACCAGCGGGAATAGCTTTCCGGTGGGACAAGTTCTTGGTGAATCTGAAATCTGGAACGCCGG TCTCTCCTTCGTTCGACAATTTTCTGAAACAGTTTCTGAAGGAGACTGGGAGTCTTGATTGTGTTAAGTTCTTCCCTCCTATGCTCGCCGATGGCCAAAC TTTAAATTTGCTGAAATTGTTCTTGTCCGTTTGGGAGAAAGGTGGATATGACGTTGCTTCTAAGAATAGACTGTGGAGCTCGGTTGCTGAAGAGTTTGAG TTAGACTGGAGCTTTGGACCGTATCTGAAATTAGTGCATGTTAAGTATCTGTCCAAATTAGAAAAACAGCTAGAGAATCTTGTGTCTTTGGAGGATATAT TGAAAGGAATTTTATCTGAGATGAAGAAGTCGAAGTCGTCTGAACTCGAGTCTGAGTTGAGTCCTGGTAAGAAAGCTGATTCATCTTCTGGCGAGCAATA TTCTAGTCAAATGGACACGAAGAGTGCAGTTGATACGGTGGAACCAAAGAGATCGAGGAAGCGCCTCATAAAGAAAACTCGAACGGATTCTCCTCTCCGA GGAAACAACAATTGCACAGCTATCGACGAAATGATGGCATCTGGTTTAACAGGAAGCATGAAAGTTGGAGATGTGGAGGATAGCAAGAGTGTCTTTGTAG GAACGGATAGGATGAGGAAACATGGTGATAATGAGGATATTGATGACATGTTGGATCTTAATGTGGTTGAGGAGTCTGTTTCTTCTCGTAATAGAAAGCA AGAGAACGCATGTCAAATGCTAAATTGGGTTCGCAGGGTTGCCCAGAATCCTTCTGATTCTGCAGTTGAGAAATTACCAGAGAAGTCTAAGTGGAAGGCA TACGGGACTGACAAGCTGTGGAAACAGGTTTTGCTGGCTAGGGATGCATTGCTCATAAAGCGAGATGTTGTTTCAAGTTCTTCTTCCACTGGACAGGAGA ACAGGTTGATGCATCCATGCATGTATGAAGATCACAACGGAACAAGTTACAATTTCAGAGATAGATCGAAATCTAGAAGGGATTCGGTCACTGGGGGAAG ATCAGCTAAGCGGTTATTTTCCTCTGCTACTCAAAGTGATTTAGATTCTTACACACCAGGGACATATAGTGGCGATTCATCGTCGTCTGAGTATAAACAT TTTGACCGTCCAACTAAAAAAGTAATTCCTGTTGGCCCAGCTTTCCAGGCTGACTTGCCAAAATGGGTTGGTGTGACTTCGGAAAATGATCCACAACAAT GGTTAGGGACTCAGGTTTGGCCGCTGCTGAACTTACCCAGTAAAGATATTATTGAGAGGGACCCTATTGGGAAAGGAAGGCAAGATCCATGTGGGTGCCA AGTGCCGGCATCAGAAGAATGTGTGAGGTATCATATCAAGGAGCGAAAGCTGAAATTGAAACGCGAATTAGGGACAGCTTACTACATCTGGGGGTTCAGC AAAATGGGCGAAGATGTCAAACTTTGCTGGACAGAAGAAGAACAAAAGAAGTTCATGGCTATTGCTACACAGATTACTCGAGATTCGGGCAGGAAATTAA TCGATGAGGTAAGCAAGAAGTTTCCGAGGAAGAGAAGGGAAGAGCTGGTGCGATATTATTTCAACGTATTCATCTTGTGGCGAAGAGCACACCAGAATCG GTTTTCTCCCAACGTAATTTTCACCGAGGACGAGGCCAGTAGTGATGAAGAAGACAAAGACGATGATGATAAGTCTGGAAAGACGGTCGATGGTTCCGGG TCTCTCTTGGGTTCTGCAAAGAAGTCCAGGAAAACGGTTTGA
AA sequence Show only first row Show all	>Lus10014762 pacid=23150176 polypeptide=Lus10014762 locus=Lus10014762.g ID=Lus10014762.BGIv1.0 annot-version=v1.0 MAGWSGIEVDEHKPAGIAFRWDKFLVNLKSGTPVSPSFDNFLKQFLKETGSLDCVKFFPPMLADGQTLNLLKLFLSVWEKGGYDVASKNRLWSSVAEEFE LDWSFGPYLKLVHVKYLSKLEKQLENLVSLEDILKGILSEMKKSKSSELESELSPGKKADSSSGEQYSSQMDTKSAVDTVEPKRSRKRLIKKTRTDSPLR GNNNCTAIDEMMASGLTGSMKVGDVEDSKSVFVGTDRMRKHGDNEDIDDMLDLNVVEESVSSRNRKQENACQMLNWVRRVAQNPSDSAVEKLPEKSKWKA YGTDKLWKQVLLARDALLIKRDVVSSSSSTGQENRLMHPCMYEDHNGTSYNFRDRSKSRRDSVTGGRSAKRLFSSATQSDLDSYTPGTYSGDSSSSEYKH FDRPTKKVIPVGPAFQADLPKWVGVTSENDPQQWLGTQVWPLLNLPSKDIIERDPIGKGRQDPCGCQVPASEECVRYHIKERKLKLKRELGTAYYIWGFS KMGEDVKLCWTEEEQKKFMAIATQITRDSGRKLIDEVSKKFPRKRREELVRYYFNVFILWRRAHQNRFSPNVIFTEDEASSDEEDKDDDDKSGKTVDGSG SLLGSAKKSRKTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Lus10014762 [exp]	0	1
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	8.5	0.8133
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10006910 [exp]	19.1	0.8010
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10010896 [exp]	22.3	0.7944
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10020992 [exp]	35.1	0.7233
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	38.5	0.7852
AT3G49990			unknown protein		Lus10010625 [exp]	49.2	0.7858
AT1G15420			unknown protein		Lus10030351 [exp]	49.3	0.7878
AT1G73600			S-adenosyl-L-methionine-depend...		Lus10009056 [exp]	54.6	0.7816
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10008778 [exp]	59.9	0.7738
AT5G66540			unknown protein		Lus10001234 [exp]	63.2	0.7838

Compare expression of checked genes

Lus10014762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.