Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63800 282 / 3e-98 UBC5 ubiquitin-conjugating enzyme 5 (.1) AT5G41340 282 / 3e-98 ATUBC4, UBC4 ubiquitin conjugating enzyme 4 (.1) AT2G46030 265 / 9e-92 UBC6 ubiquitin-conjugating enzyme 6 (.1) AT1G64230 100 / 4e-27 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT3G08690 99 / 9e-27 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT5G56150 99 / 2e-26 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT2G02760 98 / 3e-26 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT4G27960 97 / 5e-26 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G41700 97 / 5e-26 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G53300 96 / 2e-25 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036372 [exp] 312 / 6e-110 AT1G63800 286 / 9e-100 ubiquitin-conjugating enzyme 5 (.1) Lus10002359 [exp] 268 / 3e-92 AT1G63800 275 / 5e-95 ubiquitin-conjugating enzyme 5 (.1) Lus10032274 [exp] 260 / 6e-90 AT1G63800 278 / 5e-97 ubiquitin-conjugating enzyme 5 (.1) Lus10042136 [exp] 246 / 3e-84 AT1G63800 267 / 2e-92 ubiquitin-conjugating enzyme 5 (.1) Lus10024638 [exp] 219 / 4e-73 AT1G63800 229 / 2e-77 ubiquitin-conjugating enzyme 5 (.1) Lus10014187 [exp] 100 / 6e-27 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 100 / 6e-27 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10021385 [exp] 99 / 1e-26 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10036727 [exp] 99 / 1e-26 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G161000 [exp] 305 / 2e-107 AT1G63800 288 / 1e-100 ubiquitin-conjugating enzyme 5 (.1) Potri.014G086600 [exp] 304 / 4e-107 AT1G63800 283 / 8e-99 ubiquitin-conjugating enzyme 5 (.1) Potri.001G101900 [exp] 292 / 2e-102 AT5G41340 292 / 3e-102 ubiquitin conjugating enzyme 4 (.1) Potri.003G129700 [exp] 283 / 6e-99 AT5G41340 284 / 5e-99 ubiquitin conjugating enzyme 4 (.1) Potri.015G073400 [exp] 255 / 1e-87 AT5G41340 268 / 1e-92 ubiquitin conjugating enzyme 4 (.1) Potri.019G083800 [exp] 101 / 2e-27 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.011G168200 [exp] 100 / 7e-27 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 99 / 1e-26 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.019G131400 [exp] 99 / 1e-26 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 99 / 1e-26 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10014763 pacid=23150223 polypeptide=Lus10014763 locus=Lus10014763.g ID=Lus10014763.BGIv1.0 annot-version=v1.0 ATGTCGTCTCCAAGCAAACGCAGAGAGATGGACTTGATGAAACTGATGATGAGTGATTATAAGGTGGAGCTGATCAATGATGGGATGCAAGAGTTCTATG TTTATTTCAATGGACCCGACGACAGTCCATACCATGGAGGAGTATGGAGAATTAGAGTTGAGCTGCCAGAGGGTTATCCCTACAAATCCCCATCAATAGG GTTTATCAATAAGATCTACCACCCAAATGTTGATGAAATGTCCGGCTCGGTTTGTTTGGATGTCATCAATCAAACTTGGAGCCCGATGTTTGATTTGGTG AATGTGTTTGAAGTGTTCCTTCCGCAGCTTCTCTTGTATCCTAACCCGTCAGATCCATTGAACGGTGAGGCTGCAGCTCTGATGATGCGTGACCGCCCGG CTTATGATTTTAGAGTTAAAGAATACTGTCAGAAGTATGCAAAGCCTGAAGATGCTGGAGCCACTGCAGAAGAAAAGGAGAGCGACGACGACGAAATGAG TGAATATGAGTACGAATCCGAGGACGAGATGGCTGGACCAGCTGATCCTTAA
AA sequence Show only first row Show all	>Lus10014763 pacid=23150223 polypeptide=Lus10014763 locus=Lus10014763.g ID=Lus10014763.BGIv1.0 annot-version=v1.0 MSSPSKRREMDLMKLMMSDYKVELINDGMQEFYVYFNGPDDSPYHGGVWRIRVELPEGYPYKSPSIGFINKIYHPNVDEMSGSVCLDVINQTWSPMFDLV NVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRPAYDFRVKEYCQKYAKPEDAGATAEEKESDDDEMSEYEYESEDEMAGPADP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	0	1
AT5G55860			Plant protein of unknown funct...		Lus10022531 [exp]	2.0	0.9557
AT5G11680			unknown protein		Lus10020200 [exp]	2.4	0.9496
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	5.7	0.9457
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	6.9	0.9442
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	7.5	0.9319
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	8.4	0.9420
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10023358 [exp]	11.0	0.9265
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	13.2	0.9444
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	15.5	0.9335
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	16.4	0.9319

Compare expression of checked genes

Lus10014763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.