Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61440 572 / 0 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G59760 390 / 6e-134 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT4G14880 381 / 4e-132 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT2G43750 380 / 8e-131 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G22460 368 / 3e-127 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G04940 357 / 2e-122 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 338 / 2e-115 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT5G28030 334 / 1e-113 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G03630 324 / 2e-108 CS26 cysteine synthase 26 (.1) AT1G55880 122 / 4e-31 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036370 [exp] 624 / 0 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10019003 [exp] 382 / 1e-132 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 380 / 8e-132 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 375 / 2e-129 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 376 / 5e-129 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 375 / 1e-128 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10020342 [exp] 321 / 2e-107 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 301 / 4e-99 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10004118 [exp] 296 / 4e-99 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160800 [exp] 609 / 0 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.014G086300 [exp] 593 / 0 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.013G127800 [exp] 388 / 1e-133 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.005G048700 [exp] 383 / 8e-133 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 379 / 2e-131 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035200 [exp] 377 / 1e-130 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048132 [exp] 377 / 3e-130 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.005G048066 [exp] 376 / 3e-130 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.008G153300 [exp] 375 / 9e-130 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 371 / 3e-128 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10014765 pacid=23150235 polypeptide=Lus10014765 locus=Lus10014765.g ID=Lus10014765.BGIv1.0 annot-version=v1.0 ATGGCTGCTTTAAGGAGCTTTATCGCGAAACCATCGGCCTTAATCGGCCACCAGTACCGCCAGCCGATGCTGCTCAGGGCCTTGATGTCGACGGAGGCCG CCGCAGCTGATTCCTCCCCTGATTTTGCCCAGAGACTCAGAGATCTCCCCAAACTTCTCCCCGGCACTAGAATCAAACCCACTGCTCAGCAGCTTATTGG CAAGACTCCCCTTGTTTTCCTCAACCGGGTGGCTGAAGGATGTGGAGCTTATATTGCTGTTAAGCAAGAGATGTTTCAACCAACCTCTAGCGTGAAGGAC AGACCAGCAATGGCAATGATTGAAGATGCGGAGAGGAAGAACCTGATTACCCCTGGGAAGACAACCCTGATAGAGCCAACTTCTGGCAACATGGGTATCA GCATGGCGTTTATAGCAGCAATGAAAGGGTACAAGATGGTTCTGACTATGCCATCTTACACAAGCTTGGAGAGAAGGGTAACAATGAGAGCATTCGGAGC TGAGCTTATCCTTACTGACCCAACTAAGGGAATGGGTGGAACAGTCAAGAAGGCATATGATCTGCTGGAATCCACTCCGGATGCATTCATGCCTCAACAA TTCTCAAACCCTGCCAACACTAAGATCCATTTCGAAACCACGGGTCCTGAAATTTGGGAGGATACGTTGGGCCAAGTTGATATCTTTGTGATGGGAATTG GCAGTGGAGGGACTGTTTCTGGTGTTGGGCAGTATCTGAAATCCAAGAATCCTAACGTCAAGATATATGGTGTGGAGCCTGCAGAAAGCAATGTACTGAA TGGTGGCAAACCGGGTCCTCATCAAATTACCGGCAATGGAGTCGGGTTCAAACCTGATATCTTGGACATGGACATGATGGAAAAGGTTCTTGAGGTTACC AGTGAAGATGCAGTGAAAATGGCAAGAAGACTTGCCGTGGAAGAGGGACTCATGGTTGGGATATCATCTGGAGCCAATACAGTTGCAGCACTTGAACTTG CTAAAAGGCCAGAGAACAAGGGGAAGCTCATTGTGACTGTGCATGCAAGCTTCGGGGAGAGATACCTGTCGTCGGTGCTGTTCGAGGAGCTGAGGAAAGA AGCTGAGAACATGAAACCTGTTTCTGTTGATTAA
AA sequence Show only first row Show all	>Lus10014765 pacid=23150235 polypeptide=Lus10014765 locus=Lus10014765.g ID=Lus10014765.BGIv1.0 annot-version=v1.0 MAALRSFIAKPSALIGHQYRQPMLLRALMSTEAAAADSSPDFAQRLRDLPKLLPGTRIKPTAQQLIGKTPLVFLNRVAEGCGAYIAVKQEMFQPTSSVKD RPAMAMIEDAERKNLITPGKTTLIEPTSGNMGISMAFIAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPTKGMGGTVKKAYDLLESTPDAFMPQQ FSNPANTKIHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPAESNVLNGGKPGPHQITGNGVGFKPDILDMDMMEKVLEVT SEDAVKMARRLAVEEGLMVGISSGANTVAALELAKRPENKGKLIVTVHASFGERYLSSVLFEELRKEAENMKPVSVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10014765 [exp]	0	1
AT5G12010			unknown protein		Lus10024997 [exp]	3.6	0.8960
AT5G14680			Adenine nucleotide alpha hydro...		Lus10014545 [exp]	3.9	0.8488
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023184 [exp]	4.5	0.8688
AT1G70000	MYB		myb-like transcription factor ...		Lus10036678 [exp]	6.0	0.8537
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	8.0	0.8919
AT5G18610			Protein kinase superfamily pro...		Lus10012814 [exp]	8.8	0.8605
AT2G24700	B3	REM10	Transcriptional factor B3 fami...		Lus10026264 [exp]	10.1	0.8623
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10040336 [exp]	11.4	0.8105
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10019850 [exp]	23.6	0.8889
AT1G48320			Thioesterase superfamily prote...		Lus10011142 [exp]	27.3	0.8120

Compare expression of checked genes

Lus10014765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.