Plant FIBer expression Database

Lus10014766 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45990 305 / 1e-106 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036369
[exp]
357 / 1e-125 AT2G45990 434 / 3e-155 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G086100
[exp]
315 / 5e-110 AT2G45990 437 / 6e-157 unknown protein
PFAM info
Representative CDS sequence
>Lus10014766 pacid=23150220 polypeptide=Lus10014766 locus=Lus10014766.g ID=Lus10014766.BGIv1.0 annot-version=v1.0
ATGGGCGACCTTTACGCTCTGGACTTCGATGGAGTTCTCTGCGACAGCTGCGGCGAAAGCTCTCTCTCCGCCGTCAAGGCTGCCAAAGTGAGATGGCCGG
ATTTGTTCACCGGAGTTGACTCCGGCATTGAAGACTGGATTGTTGCTCAGATGCATACAGTGCGGCCTGTTGTGGAAACTGGCTACGAGAATTTGTTGCT
CGTGAGATTGTTACTGGAGATGAAGGTTCCCTCAATTAGGTTATCCTCGGTTGCGGAGGGACTTGCTGTTGAGGGGATATTGGAAGGTTGGTCGGAACTC
AAACCTGTGATCATGGAAGAATGGGGCGAGCAAAATAGAGATGAGCTGATAGATCTTTTTGGGAAAGTCAGGGACGAGTGGATGGACAATGATTTGACTA
CTTGGATCGGAGCAAACAGGTTCTATCCAGGCGTTCCTGAAGCCCTGAAATTTGCGAGCTCCACAATATACATAGTAACCACCAAGCAGGGCCGGTTTGC
AGATGCTTTACTAAGAGAGCTAGCAGGGGTAACAATCCCACCTGAAAGAATATATGGACTAGGAACCGGGTCAGTATTATACTGTTCTTCCATTGACGTA
GCTTAG
AA sequence
>Lus10014766 pacid=23150220 polypeptide=Lus10014766 locus=Lus10014766.g ID=Lus10014766.BGIv1.0 annot-version=v1.0
MGDLYALDFDGVLCDSCGESSLSAVKAAKVRWPDLFTGVDSGIEDWIVAQMHTVRPVVETGYENLLLVRLLLEMKVPSIRLSSVAEGLAVEGILEGWSEL
KPVIMEEWGEQNRDELIDLFGKVRDEWMDNDLTTWIGANRFYPGVPEALKFASSTIYIVTTKQGRFADALLRELAGVTIPPERIYGLGTGSVLYCSSIDV
A

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G45990 unknown protein Lus10014766
[exp]
0 1
AT5G47435 formyltetrahydrofolate deformy... Lus10028958
[exp]
6.3 0.8060
AT4G14210 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoen... Lus10041260
[exp]
10.7 0.7776
AT1G10310 NAD(P)-binding Rossmann-fold s... Lus10042410
[exp]
14.9 0.7776
AT5G59400 unknown protein Lus10016531
[exp]
16.7 0.7850
AT4G17740 Peptidase S41 family protein (... Lus10004402
[exp]
22.9 0.7750
AT1G10660 unknown protein Lus10029133
[exp]
23.4 0.7958
AT1G76390 PUB43 plant U-box 43, ARM repeat sup... Lus10043453
[exp]
23.4 0.7617
AT1G68830 STN7 STT7 homolog STN7 (.1) Lus10041490
[exp]
25.5 0.7830
AT5G64440 ATFAAH fatty acid amide hydrolase (.1... Lus10007094
[exp]
38.4 0.7297
AT4G20760 NAD(P)-binding Rossmann-fold s... Lus10036204
[exp]
38.9 0.7533

Lus10014766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.