Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00360 754 / 0 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 751 / 0 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT2G45970 739 / 0 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT1G63710 687 / 0 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT5G58860 609 / 0 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) AT4G29910 546 / 0 EMB2798, ORC5, ATORC5 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1) AT5G23190 439 / 1e-141 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 432 / 3e-140 Cytochrome P450 superfamily protein (.1) AT1G13150 366 / 2e-114 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT1G24540 357 / 2e-111 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032278 [exp] 702 / 0 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10018217 [exp] 598 / 0 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10040687 [exp] 596 / 0 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10024644 [exp] 540 / 0 AT1G63710 562 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10018831 [exp] 432 / 6e-143 AT4G00360 403 / 8e-139 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) Lus10010193 [exp] 422 / 1e-135 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 418 / 1e-133 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 400 / 4e-127 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017789 [exp] 380 / 3e-123 AT2G45970 465 / 1e-163 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085800 [exp] 805 / 0 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 726 / 0 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.014G085900 [exp] 658 / 0 AT4G29910 635 / 0.0 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1) Potri.009G043700 [exp] 611 / 0 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 600 / 0 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.007G072100 [exp] 438 / 1e-141 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.005G092200 [exp] 431 / 1e-138 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.008G183300 [exp] 375 / 5e-118 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.010G050100 [exp] 363 / 1e-113 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.001G135975 [exp] 347 / 2e-111 AT4G29910 299 / 8e-99 EMBRYO DEFECTIVE 2798, origin recognition complex protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10014768 pacid=23150196 polypeptide=Lus10014768 locus=Lus10014768.g ID=Lus10014768.BGIv1.0 annot-version=v1.0 ATGGGAAAGGAAGAAAGTCCAACGGTGACAAGGAGGAAAACCAGGTCATCGTGTGCTGCTGTAGCTTCAAATGATGATGAGGTTCAAACTTTGAAAACAC CTCCACTGCCCAATCCAACAGTAAATGACCTTGCTTTCGGAGGTGAACCCCTTAGCTTTGATGATCTGCTGTCTAGTTTCCCAGCCAGGCGCTCTCAGAT TCTTCAGCTGGTGCACTTATTAGGTCCTTCAAACTCCCCTGTGCTTCCTCTTTTTGTGTATGGAGGTGTTTCCACAGGAAAAACTACCACCATTCTCCAA GTTTTCAGGCATCTTAATCGTCCATTTGTCTATGCAAGCTGCCGTACTTGTTATAGCCCTCGGATCTTGTTCGAATCCATTCTAAACCAGTTGTTGCTTC ATAGAAAGAGTGCTGATAATGGTTATGCAAGTGCAAAACGATGTGAAAAGCCGTCTGATTTTGTCAACTTTCTCCGTGAAGATGTTGGAAAGATTGTCGA CAATCTGAAGAAGGATCATTCAGGGAAGCAGAACAACTCGAATAAGTTGCCCGCACGGCCTAATGGAGATGGCCTCTACTTGATACTTGATAACTTGGAG CTAGTGAGGGAGTGGGATAAAAGTTCGAGCTTATTGCCTTTTCTGTTTAACCTCTATGATATTCTCAAGCTGCCTAATTTCGGACTCATATTCATTAGCA GCAGTTCACCAGATATGTATTACTCAAGTATGGGGTACATAGAGCCTATTCCTGTGTTTTTCCCTGAATATACAGAAGAAGATCTTCGCCGAATACTGAT GAGGAATCAATCAAACCAGAAGCTATATGGTTGGTTTCTTGACATTGTACTGAGGCCATTCTGTAGAGTGACCAGGCGACTCGATGAATTAAGTCCAGTC TTTTCATCTTTGTTTCAAAAGTATTCCGAACCACTTAGCGACACAAGTACCTTACCCAGTGATGGCATGAAGAGAAGATTGTTTATTAGCTTTCAGCCTT GCATTTCGCCTTATTTGAATGATATATTTTGGGGGCCATCTCTATCTTTCTTAGGAGTTGATTCCGTGAAGGATACTACCAGGGAGATAGATTTCCATAT GTCCACTGCAGCTAAATATCTTCTTATCTCAGCATTCATCGCTTCAAGAAATCCGGCTACACTGGATGCGTCTTTGTTCGATAGCACTGGTGGCTCAGAT AATCCCAAGCGTAAGAGGAAAGCCTCCGAGAAGTCAAAGGAGCAAAAGGAAACTGCGGAACAGGAATTGCTTATGAAAGGTCCCGGAACTTTTCCATTGG AAAGACTGCTGGCTATCTTCCAATGCATAACGTCGGTAACAGATGTATCCCTTGATGAAGACGAACATGGAGATAGTTTTTCAACAGAAGAAGGCAGCAA TGCGCTCATGTCAAGTGTCCTACTACAGCTGTCGACTCTTTGTGATGCTAATTTCGTAGTAAAAGGCGGAAGCTGCCCGTTGGAAGGTTCGACAAGGTAT CGATGCACCATTTCTGAAGATTTGGCTCTAAAGTCTGAAGAAAAACTAAAACACTCTCAACCATTTTCATCTACACCTCGAAAAACCATCTGGGTTCCAA AATTTTCAATTCAATTGGTGGGTTTCACTTTCTCTGGGGAATTTCATCGAACACCTTATGGACAACATCTCGACGGCGCTGGTTCTCCTCTCAGCAGCGA CCGCTTACCTCCTGTGGTTCACCTTCATAATCTCTCGTTCGTTGCGGGGCCCACGTGTCTGGCCGTTGCTCGGAAGCCTCCCCGGACTGATCGAGAACTG CGGCCGCCTCCACGACTGGATCGCCGCAAACCTCCAAGCCTGCGGCGGCCCCTCCAAGCCTGCGGCGGCACTTACCAGACCTGCATATGTGCGGTGCCAT TTTTAGCTAAAAAACAAGGTCTCGTGACCGTTACGTGCGACCCGAAGAACATCGAGCACATTTTAAAAATCCGGTTCGAAAACTACCCCAAGGGCCCCAC CTGGCAAGCCGTATTCCACGAGCTACTCGGCGAGGGGATCTTCAATTCTGACGGTGACACATGGCGTTTCCAACGTAAGACCGCCGCACTCGAGTTCACC ACTAGGACCCTCCGTCAGGCCATGGCTCGGTGGGTTAGTCGAACCATCAAGTTGAGGTTCTGTCCCGTCCTCAAATTGGCTCAGGAGAATTTCGAGCCGG TCGACTTGCAGGATTTGCTACTTCGGCTCACTTTCGACAACATTTGCGGTCTGGCATTCGGGAAGGACCCGCAAACTTGCACTGCGGGACTTCCCGAAAA CGAATTTGCATCGGCATTTGACCAAGCCACTGAAGCATCATTGCAACGTTTCATTCTTCCGAAAGTTGTGTGGAGAGTGAAGAAATTGCTCGGGCTCGGG ATGGAAGTGAGCTTGAGCCGAAGCATTACTCGGCTCGATCGTTATCTCGCTGACATCATCAACCAACGGAAGGATGAGTTGCTGAGTCGGACAAAAGACA AAAACAACAGCAATCTCCAACACGACGACCTAGTCACTAGGTTTATGAAGAGAAAAGAGTCCTACTCAGACTCTTTCCTCCAACATGTGGCGCTAAACTT CATCCTAGCTGGAAGAGACACGTCATCTGTGGCGTTGAGCTGGTTCTTCTGGCTGATCATCCAAAACCCGTCAGTTGAAGATAAAATCCTACGTGAGCTA TGCAGCGTTTTGGAGGAGACACGTGGCGCTGACCTGGCTAAGTGGCTTGACGACCCGTTGGGGTTTGAAGAGGCTGACCGCCTCATCTACCTGAAAGCGG CTTTATCGGAGACTCTCCGGCTTTACCCGTCGGTCCCACAGGACTCCAAGCACGTCGTCGCCGACGACGTTCTACCGGACGGGACGTTCGTGCCGGCGGG ATCGTCGATCACCTACTCCATATACGCAGCCGGGAGGATGCGGACAGCGTGGGGAGCTGATTGCATGGAGTTCCGACCGGAGCGATGGCTGTCCGCCGGC GGTGAAAAATTCATACCGCAGGATCCGTACAAGTTCGTCGCTTTCAACGCCGGCCCGAGGGTATGCTTGGGGAAGGAGTTGGCGTATCTTCAGATGAAGT CGGTTGCCGCGGCGGTGCTGCTCCGGCACCGGCTGACGGTGGTGGAGGGGCATAAGGTGGAGCAGAAGATGTCGTTGACTCTGTTCATGAAATACGGGCT GAAGGTCAACGTGTTGAAGAGAGACCTTAAAGAGACGGAAGCGGCGATGATGAAGAAGCAGGCGGCAACCGTGGTCGGCGACGTTGAGGATGAAAGACAA AATTGTAATTGGGAGAAAGCGGAGGAGCATCTGCCGTTAGCAGCCGGCGTTAGATGTAACGGTGTGTGGGAGAGTGGGAGTAAGCTTGATCAGAAAAGGA ATTGA
AA sequence Show only first row Show all	>Lus10014768 pacid=23150196 polypeptide=Lus10014768 locus=Lus10014768.g ID=Lus10014768.BGIv1.0 annot-version=v1.0 MGKEESPTVTRRKTRSSCAAVASNDDEVQTLKTPPLPNPTVNDLAFGGEPLSFDDLLSSFPARRSQILQLVHLLGPSNSPVLPLFVYGGVSTGKTTTILQ VFRHLNRPFVYASCRTCYSPRILFESILNQLLLHRKSADNGYASAKRCEKPSDFVNFLREDVGKIVDNLKKDHSGKQNNSNKLPARPNGDGLYLILDNLE LVREWDKSSSLLPFLFNLYDILKLPNFGLIFISSSSPDMYYSSMGYIEPIPVFFPEYTEEDLRRILMRNQSNQKLYGWFLDIVLRPFCRVTRRLDELSPV FSSLFQKYSEPLSDTSTLPSDGMKRRLFISFQPCISPYLNDIFWGPSLSFLGVDSVKDTTREIDFHMSTAAKYLLISAFIASRNPATLDASLFDSTGGSD NPKRKRKASEKSKEQKETAEQELLMKGPGTFPLERLLAIFQCITSVTDVSLDEDEHGDSFSTEEGSNALMSSVLLQLSTLCDANFVVKGGSCPLEGSTRY RCTISEDLALKSEEKLKHSQPFSSTPRKTIWVPKFSIQLVGFTFSGEFHRTPYGQHLDGAGSPLSSDRLPPVVHLHNLSFVAGPTCLAVARKPPRTDREL RPPPRLDRRKPPSLRRPLQACGGTYQTCICAVPFLAKKQGLVTVTCDPKNIEHILKIRFENYPKGPTWQAVFHELLGEGIFNSDGDTWRFQRKTAALEFT TRTLRQAMARWVSRTIKLRFCPVLKLAQENFEPVDLQDLLLRLTFDNICGLAFGKDPQTCTAGLPENEFASAFDQATEASLQRFILPKVVWRVKKLLGLG MEVSLSRSITRLDRYLADIINQRKDELLSRTKDKNNSNLQHDDLVTRFMKRKESYSDSFLQHVALNFILAGRDTSSVALSWFFWLIIQNPSVEDKILREL CSVLEETRGADLAKWLDDPLGFEEADRLIYLKAALSETLRLYPSVPQDSKHVVADDVLPDGTFVPAGSSITYSIYAAGRMRTAWGADCMEFRPERWLSAG GEKFIPQDPYKFVAFNAGPRVCLGKELAYLQMKSVAAAVLLRHRLTVVEGHKVEQKMSLTLFMKYGLKVNVLKRDLKETEAAMMKKQAATVVGDVEDERQ NCNWEKAEEHLPLAAGVRCNGVWESGSKLDQKRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10014768 [exp]	0	1
AT5G42960			unknown protein		Lus10007162 [exp]	9.4	0.9063
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10011283 [exp]	9.9	0.9026
AT3G07690			6-phosphogluconate dehydrogena...		Lus10016364 [exp]	13.3	0.8518
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	16.0	0.8954
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	16.2	0.8742
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	18.3	0.8532
AT5G49560			Putative methyltransferase fam...		Lus10014309 [exp]	21.0	0.8645
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10009315 [exp]	26.2	0.8249
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10021298 [exp]	26.7	0.8178
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	31.4	0.8591

Compare expression of checked genes

Lus10014768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.