Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00370 665 / 0 PHT4;4, ANTR2 anion transporter 2, Major facilitator superfamily protein (.1) AT1G01650 577 / 0 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT2G29650 561 / 0 PHT4;1, ANTR1 anion transporter 1, phosphate transporter 4;1 (.1.2.3) AT1G63690 553 / 0 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 322 / 2e-99 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 285 / 6e-86 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT2G38060 251 / 2e-73 PHT4;2 phosphate transporter 4;2 (.1) AT5G20380 240 / 2e-69 PHT4;5 phosphate transporter 4;5 (.1) AT3G46980 239 / 6e-69 PHT4;3 phosphate transporter 4;3 (.1.2.3) AT5G44370 202 / 8e-57 PHT4;6 phosphate transporter 4;6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036364 [exp] 837 / 0 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10036366 [exp] 758 / 0 AT4G00370 812 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10017796 [exp] 699 / 0 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10018834 [exp] 585 / 0 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10031104 [exp] 569 / 0 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10040686 [exp] 564 / 0 AT2G29650 760 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10018218 [exp] 561 / 0 AT2G29650 761 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Lus10032285 [exp] 523 / 2e-173 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10024653 [exp] 513 / 3e-173 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085700 [exp] 671 / 0 AT4G00370 841 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Potri.002G160500 [exp] 638 / 0 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G085300 [exp] 627 / 0 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.009G043800 [exp] 591 / 0 AT2G29650 778 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.001G249800 [exp] 587 / 0 AT2G29650 773 / 0.0 anion transporter 1, phosphate transporter 4;1 (.1.2.3) Potri.003G128500 [exp] 586 / 0 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G103100 [exp] 564 / 0 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G232200 [exp] 314 / 2e-96 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 305 / 3e-93 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.016G111000 [exp] 256 / 2e-75 AT2G38060 687 / 0.0 phosphate transporter 4;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10014769 pacid=23150236 polypeptide=Lus10014769 locus=Lus10014769.g ID=Lus10014769.BGIv1.0 annot-version=v1.0 ATGGGAAAGTTGATATCTTTATGGGTATTTGTGGCTTTGTTGACTCTGATGAGTCCGGGTCTTGCTTCAGCTGGTGACATAGTTCATCCAGACACTAAGG CTCCCAGTAAGCCTGGCTGCGACAACAACTTTGTTCTGGTAAAGATCCCCACTTGGGTTGATGGAGTAGAAGATGTTGAGTATGTCGGTGTTGGTGCACG TTTTGGCCCGACCTTAGAATCAAAAGAGAAACATGCTAACAAATCTAGGCTTGCTTTAGCAGACCCTCCTGATTGTTGCAGCACACCCCGGAATAAGCTT ACAGGGGAGGTAATCATGGTGCACCGTGGAAACTGCAGCTTCACAACAAAGTCTAATATCGCCGAGGCAGCTGGCGCATCTGCTATTCTGATTATAAACT ATCGAACTGAGCTATTCAAGATGGTTTGTGAAGAAAATGAAACTGATTTGAGTATAGGAATCCCAGCTGTCATGCTTCCACAAGATGCTGGAACTGCACT GGAAACTTACATGAGCAGCAATGATTCAGCAATGATTCAGTACGACGATTGGCTTACCGGTGGGACCACTTCAGTTCTTCTGCAGATTTATTCCCCACGG AGGCCGTTAGTTGATGTTGCAGAAGTATTTCTATGGCTTATGGCTGTCAGCATAATCCTATGTGCTTCTTTTTGGTCTGCCTGGAGTGCAAGAGAGGCTG CAATAGAGCTAGAAAAGCTCTTAAAGGATGGTCTAGATGTTCATCAGGATGGCGCTTGTTCTACCAGCATAGTTAACATCAACGTGATTTCGGCGGTTCT CTTTGTTGTAGTTGCTTCATGTTTCTTAGTTATGCTCTACAAACTTATGTCTTTCTGGTTTATCGAGATTTTGGTAGTTCTCTTCTGCATCGGCGGTGTT GAGCTGATTGATGCTGACTGCAGCTTCAGATGCTTTCAACATGCTGCCGAATCGTTTGTCAAAGTCCCGTTCTTTGGAGCTGTCTCTTATCTGACATTAA TGGTCTCTCCCTTGTGCATAGCCTTTACAGTTGTTTGGGCAGTATATCGCCGAGTTTCATTTGCTTGGATAGGTCAAGATATTCTTGGTATTGCGCTGAT CATTACCGTTCTTCAGATTGTTCACGTCCCAAACCTGAAGGTAGCTCGTGGTGATAAGAGTGGCGAGGACGGGATACCAATGCTACTAAAAATCCCTAGG ATGTTCGATCCGTGGGGCGGATACAGCATCATCGGCTTCGGTGACATCATCTTACCCGGACTTGTTGTCGCTTTTGCATTGAGATACGACTGGCTGACGA AGAAGACTCTCAGAACAGGATACTTCATATGGGCAATGACCGCATATGGCTTCGGGAAAAGATGCTATTCAGAAGTACGGAATGCACAGGCTACAACCTG CTACGCCACCAGAATGGTTAAACAGCTCGTTCCTGTGTTCTCAACATCTTCTGTTCGTAGTCAGGTTAACTGTCACTTTAATGGAGCGACCTTCAAACCA TCTGCAAGTCCGGTTTATAAAAGAGGCAGAGGGAAATGGGAGCATTTGGGGTCTTCTTCAAAGGTCAACAGGACCTGTGCTTACTACAAATCTGAGGAGT ACGACATACCACCGGTGGAAGCAGCTATCGACTCGCTGAACTCGGCAGATGGTTCTGCCGAGGCTGCTTTAGTTGAGGGAAAACTTGAGCAAGCTTCCCC ATGGTGGCAGCAGTTTCCGAAGAGATGGGTGGTTGTAATGCTGTGTTTTACAGCATTTCTGTTATGCAACATGGACCGGATTGTTGGAGGCATTTGGGCT GATAAAATTGGTGGAAAACTAGTATTGGGTTTTGGAGTAGTGTGGTGGTCAATCGCTACCATTCTGACTCCAATTGCCGCCAAAGTTGGACTCCCATTTC TGCTTATGATGCGAGCTTTTATGGGAATTGGTGAGGGTGTCGCAATGCCGGCTATGAACAACATTCTGTCAAAGTGGATTCCAGTGTCAGAGAGAAGTAG AGCTCTAGCTCTTGTTTATAGTGGGATGTATATGGGTTCCGTGACAGGATTGGCTCTCTCTCCTATTCTAATTCAGAAATTTGGGTGGCCATCTGTCTTC TATTCGTTTGGCTCCCTTGGAAGCATCTGGTTTGTATTGTGGCTTAAAAAGGCATATAGCTCACCGGATCTTGACCCAGAGCTGAGTCCACAGGAGAAGA AGCTTATCATGGGAGGTAGCACATCGAAGGAACCTGTCTCAGTCATTCCTTGGAAGTTGATTTTATCAAAACCACCCGTTTGGGCACTTATTGTTTCTCA CTTCTGCCATAACTGGGGAACTTTTATACTTTTGACTTGGATGCCTACTTACTACAACCAGGTTTTAAAGTTTAACCTCACTGAATCTGGGCTACTCTGC GTCTTGCCATGGCTGACAATGGCTGCTTTCGCCAACTTAGGAGGATGGATTGCTGACACACTTGTTAGCAGAGGCGTTTCTATAACAAATGTCAGAAAGG CAAGGACTAGAATTCTACTCGGATCGGACGCGTTCTCCCAATCTGGTCTCTACTCCAATCACCAAGACATTGGCCCACGCTATGCTGGAGTTCTGTTAGG ACTATCAAACACTGCTGGAGTGCTTGCTGGTGTCTTTGGCACTGCAGCAACTGGCTACATTCTCCAAAGAGGTTCGTGGGACGATGTGTTCAAGGTAGCT GTCGTTCTGTACGTAATCGGAACTGTGGTTTGGAATTTGTTTGCGACTGGGGAAAGAGTCCTTGACTGA
AA sequence Show only first row Show all	>Lus10014769 pacid=23150236 polypeptide=Lus10014769 locus=Lus10014769.g ID=Lus10014769.BGIv1.0 annot-version=v1.0 MGKLISLWVFVALLTLMSPGLASAGDIVHPDTKAPSKPGCDNNFVLVKIPTWVDGVEDVEYVGVGARFGPTLESKEKHANKSRLALADPPDCCSTPRNKL TGEVIMVHRGNCSFTTKSNIAEAAGASAILIINYRTELFKMVCEENETDLSIGIPAVMLPQDAGTALETYMSSNDSAMIQYDDWLTGGTTSVLLQIYSPR RPLVDVAEVFLWLMAVSIILCASFWSAWSAREAAIELEKLLKDGLDVHQDGACSTSIVNINVISAVLFVVVASCFLVMLYKLMSFWFIEILVVLFCIGGV ELIDADCSFRCFQHAAESFVKVPFFGAVSYLTLMVSPLCIAFTVVWAVYRRVSFAWIGQDILGIALIITVLQIVHVPNLKVARGDKSGEDGIPMLLKIPR MFDPWGGYSIIGFGDIILPGLVVAFALRYDWLTKKTLRTGYFIWAMTAYGFGKRCYSEVRNAQATTCYATRMVKQLVPVFSTSSVRSQVNCHFNGATFKP SASPVYKRGRGKWEHLGSSSKVNRTCAYYKSEEYDIPPVEAAIDSLNSADGSAEAALVEGKLEQASPWWQQFPKRWVVVMLCFTAFLLCNMDRIVGGIWA DKIGGKLVLGFGVVWWSIATILTPIAAKVGLPFLLMMRAFMGIGEGVAMPAMNNILSKWIPVSERSRALALVYSGMYMGSVTGLALSPILIQKFGWPSVF YSFGSLGSIWFVLWLKKAYSSPDLDPELSPQEKKLIMGGSTSKEPVSVIPWKLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLLC VLPWLTMAAFANLGGWIADTLVSRGVSITNVRKARTRILLGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVA VVLYVIGTVVWNLFATGERVLD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10014769 [exp]	0	1
AT5G17790		VAR3	VARIEGATED 3, zinc finger (Ran...		Lus10013630 [exp]	1.4	0.9091
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	1.4	0.9268
AT3G15090			GroES-like zinc-binding alcoho...		Lus10013106 [exp]	7.1	0.8476
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036471 [exp]	8.9	0.8854
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	9.2	0.8983
AT2G31890		ATRAP	RAP (.1)		Lus10033769 [exp]	10.2	0.8947
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	12.4	0.9029
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	14.9	0.8941
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008740 [exp]	19.0	0.8501
					Lus10043150 [exp]	21.9	0.8362

Compare expression of checked genes

Lus10014769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.