Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61415 427 / 6e-150 ASK21 SKP1-like 21 (.1.2) AT2G45950 419 / 3e-147 ASK20 SKP1-like 20 (.1.2) AT3G21850 87 / 2e-20 ASK9 SKP1-like 9 (.1) AT2G03170 78 / 3e-17 ASK14 SKP1-like 14 (.1) AT4G34210 77 / 6e-17 ASK11 SKP1-like 11 (.1) AT1G75950 76 / 2e-16 UIP1, SKP1A, ATSKP1, ASK1, SKP1 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) AT2G25700 76 / 3e-16 ASK3 SKP1-like 3 (.1) AT1G20140 75 / 5e-16 ASK4 SKP1-like 4 (.1) AT5G42190 75 / 5e-16 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) AT4G34470 74 / 1e-15 ASK12 SKP1-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018833 [exp] 540 / 0 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10017795 [exp] 513 / 0 AT3G61415 445 / 2e-157 SKP1-like 21 (.1.2) Lus10036365 [exp] 366 / 2e-126 AT3G61415 424 / 1e-149 SKP1-like 21 (.1.2) Lus10019794 [exp] 81 / 8e-18 AT1G75950 241 / 8e-83 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10013575 [exp] 79 / 3e-17 AT1G75950 255 / 2e-88 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Lus10017282 [exp] 78 / 4e-17 AT5G42190 259 / 6e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10017281 [exp] 78 / 4e-17 AT5G42190 259 / 4e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10005610 [exp] 78 / 4e-17 AT5G42190 261 / 2e-90 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Lus10019432 [exp] 76 / 3e-16 AT1G20140 186 / 2e-61 SKP1-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G085400 [exp] 502 / 2e-179 AT3G61415 406 / 5e-142 SKP1-like 21 (.1.2) Potri.002G160600 [exp] 483 / 5e-172 AT3G61415 426 / 5e-150 SKP1-like 21 (.1.2) Potri.012G143500 [exp] 431 / 3e-151 AT3G61415 394 / 4e-137 SKP1-like 21 (.1.2) Potri.015G146500 [exp] 422 / 3e-148 AT2G45950 350 / 3e-120 SKP1-like 20 (.1.2) Potri.002G018700 [exp] 81 / 2e-18 AT5G42190 249 / 6e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.009G135800 [exp] 81 / 3e-18 AT1G20140 215 / 9e-73 SKP1-like 4 (.1) Potri.004G175900 [exp] 77 / 7e-17 AT5G42190 245 / 2e-84 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G109900 [exp] 77 / 1e-16 AT5G42190 249 / 5e-86 Arabidopsis SKP-like 2, E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (.1) Potri.005G243100 [exp] 74 / 8e-16 AT1G75950 244 / 2e-84 UFO INTERACTING PROTEIN 1, ARABIDOPSIS SKP1 HOMOLOGUE 1, S phase kinase-associated protein 1 (.1) Potri.012G086900 [exp] 48 / 1e-06 AT4G34210 130 / 1e-39 SKP1-like 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF03931 [flax] [poplar] Skp1_POZ Skp1 family, tetramerisation domain CL0033 [flax] [poplar] PF01466 [flax] [poplar] Skp1 Skp1 family, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10014770 pacid=23150185 polypeptide=Lus10014770 locus=Lus10014770.g ID=Lus10014770.BGIv1.0 annot-version=v1.0 ATGTCAGAAGTTGACATGGCGGTCATAAAACCTGAGATGCTGAAGTCGTATATTTGGCTTCAGACTGCGGATGGTTCAATTCAACAAGTAGAACAAGAGG TTGCCATGTTTTGTCCCATGATATGTCATGAAATAATACAGAAGGGCATGGGGACATCAAAGAATTACGCTATATCTCTTCCTCAACGCGTCAGTCCTGC CATGCTGAGCCTCATTCTTGATTATTGCAGGTTTCATCAAGTACCAGGTCGATCCAACAAGGAACGGAAGTCTTATGATGAAAGGTTCATCCGGATGGAT ACTAAAAGGCTTTGTGAGTTGACATCAGCAGCTGATAGTCTCCAGCTTAAGCCTTTGGTTGATCTCACTAGTCGTGCATTGGCACGGATTATAGAGGGGA AAACGCCAGAGGAGATACGTGAGATATTTCATTTGCCTGATGATCTTACAGAGGAAGAGAAGTTGGAGCCTTTGAGAAATACAACGGATGATCCCCGGAT TAGACTTTTAAATAGATTGTATGCAAAGAAGAGGAAAGAGCTGAAAGAGAAGCAGAAACAAAAGTTTCAGAATATCGAGTTGGAAGAGGAGCAAGTTGAT GAGCGATCTGTTGATGACCTGTTGTCATTTATTAATGGAGAAAATACAGATTCGAAAGGAGTTAAAATGTCAAAAAATAGAAAGAAAAATCGCAAGAGAA AGGATCAGCAAAAGTGTACTTCCATTGATCAAACTGCTGAACCTCATAAACAGGATTCAAATGGCTCGGGCTATTTAGGCCATAGTACTGCTGCCGATAA CGAATCACATTCTACGATGAGCGAAACATCGAAATTGCAAGACATAGAAGATGACATTTTTTATCGTAAAGAAGAGCTTGATGATGTTGATATAGACGAT GAGATTGACCCTGCATTGAAGGAGAAAATTGACAGAGAGGTAGAAGATTTTGCACGGAGATTGAGTTCAGACTGGCCTGAAAGAATGCAGGAGCTTCTAT GTTTGGGTCAAGAGAGGAACCCTCTTCACTTGTCCATCAATGGCAATGGCAGCTTGAGAAAACACACAAATCAAGAGCAGAAATGA
AA sequence Show only first row Show all	>Lus10014770 pacid=23150185 polypeptide=Lus10014770 locus=Lus10014770.g ID=Lus10014770.BGIv1.0 annot-version=v1.0 MSEVDMAVIKPEMLKSYIWLQTADGSIQQVEQEVAMFCPMICHEIIQKGMGTSKNYAISLPQRVSPAMLSLILDYCRFHQVPGRSNKERKSYDERFIRMD TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLRNTTDDPRIRLLNRLYAKKRKELKEKQKQKFQNIELEEEQVD ERSVDDLLSFINGENTDSKGVKMSKNRKKNRKRKDQQKCTSIDQTAEPHKQDSNGSGYLGHSTAADNESHSTMSETSKLQDIEDDIFYRKEELDDVDIDD EIDPALKEKIDREVEDFARRLSSDWPERMQELLCLGQERNPLHLSINGNGSLRKHTNQEQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10014770 [exp]	0	1
AT5G36260			Eukaryotic aspartyl protease f...		Lus10027001 [exp]	2.6	0.8160
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	4.6	0.7608
AT2G16460			Protein of unknown function (D...		Lus10042073 [exp]	5.0	0.7773
AT5G02610			Ribosomal L29 family protein ...		Lus10019180 [exp]	7.3	0.7803
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	8.4	0.7493
AT1G12650			unknown protein		Lus10024493 [exp]	10.0	0.7784
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10008593 [exp]	11.2	0.7751
AT1G12650			unknown protein		Lus10017837 [exp]	12.3	0.7908
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10005562 [exp]	16.9	0.7333
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	17.7	0.7420

Compare expression of checked genes

Lus10014770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.