Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 211 / 1e-60 U-box domain-containing protein kinase family protein (.1) AT1G72760 179 / 6e-50 Protein kinase superfamily protein (.1) AT4G25160 173 / 3e-47 U-box domain-containing protein kinase family protein (.1) AT3G49060 172 / 7e-47 U-box domain-containing protein kinase family protein (.1.2) AT5G61550 172 / 7e-47 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 171 / 1e-46 U-box domain-containing protein kinase family protein (.1) AT4G31230 168 / 8e-46 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 167 / 1e-45 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT1G17540 167 / 2e-45 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 166 / 2e-45 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036363 [exp] 417 / 3e-140 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10036362 [exp] 236 / 2e-69 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 235 / 3e-69 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036359 [exp] 230 / 6e-68 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 223 / 3e-65 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10016557 [exp] 193 / 3e-54 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 188 / 2e-52 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10008466 [exp] 178 / 3e-49 AT5G12000 608 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006021 [exp] 176 / 1e-48 AT5G12000 619 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160300 [exp] 251 / 4e-76 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 241 / 2e-71 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 230 / 2e-67 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 192 / 3e-54 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.009G030400 [exp] 183 / 9e-51 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 178 / 3e-49 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 176 / 2e-48 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G061600 [exp] 173 / 1e-47 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G225300 [exp] 168 / 8e-46 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 168 / 9e-46 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10014771 pacid=23150215 polypeptide=Lus10014771 locus=Lus10014771.g ID=Lus10014771.BGIv1.0 annot-version=v1.0 ATGTCGTCTACACAGGACTCGGGTTCAGAGTTCGCTGTTGATGATGACATCGTGTATGTCGCAGTTGGGAAAGATGTAGAAGAAAGCAAGTTGAATCTTT TGTGGGCACTCGCCAATTTCCCAGCGGGAACTCGATGCTGCATTCTTCATGTTCATCAGCCTGCTACAACTATCCCCCTTATTGGTGGAAGTTTCTCAGC AAGCAGACTTGAGCAACACGAAATGGCCGAGTTTCGCGAGCTGGAAAGGAGGATCATGCTCAAGATTCTGGACGAGTATCTTCTCCTATGTCACCGGGAG ACACAAGTAGAAGCAGAAAGGATGATTGTGGAAATGGATGAGGTGGGGAACGGCATTGTGGAGCTTGTATACCGGAACGGTATAAAGAAGCTTGTCATGG GAGCAGCAGCTGACAAATACTACTCACAGGAAGGTGGTATCGATTGCAGTTCGACGGAATCTTTTGTTCGTGAATCTTCTGAGAACAATAAACTTGAGAT CTGTGAAGTTCCTTCTACACAGGAAAGAGATGACACCCAAGAACTATATTACTTACTGGACCAAGCAATGCTGGAGGCTGAATATCTGAAACAAGAAACC CTTGAAGAGTCTCATAAGCGCCGAGCAGCTGAAAAGATAGCCTTGAATGCCATCCGCCGGGTTACGCTAATTGGAGCCTGCCAAGAATCCTACGCTCTAA TCTACGAGTATATGCCTAATGGAAACCTCGAAGACCAACTAAACTGCAAGAACGACACTCCCCCGCTACCGTGGCAAGCACGAATCCGTCTAGCTACAGA GTTGTGCTCTGTCCTCATATTCCTCAACTCTAGCAAGCCCAACAGCATCGTCCATGGCGACCTAAAACCCTCAAACATTCTCCTGGACGCTAACCTCGGG TGCAAACTCAGCGACTTTGGAATCTTCCGTGCACTTCCCGGTTCAGGTAACAACGCAGCAGAAGCCACGTTGTATCACGTAACTGACCCGAAGGGCACTT TCCACTACCTGGACCCACATTTCCTTACGACGAGGGAGTTGTCTCCGAAATCCGATACATACTCGTTCGGGATCATACTGTTGCAGCTATTGACGGGGAA ATCGGCAGTAGGAATCGCAAACGAGACTAGGTTGGCCATGAATGAGGGCATTCTGAGTTTCTTGGATCAGTCAGCCGGAGTTTGGCCTTTCTTGCAACAT GGCCATTGGGAAGCTGAAGGAGCTTGGTGTTGGTGTTCTGGACTTCAGTGA
AA sequence Show only first row Show all	>Lus10014771 pacid=23150215 polypeptide=Lus10014771 locus=Lus10014771.g ID=Lus10014771.BGIv1.0 annot-version=v1.0 MSSTQDSGSEFAVDDDIVYVAVGKDVEESKLNLLWALANFPAGTRCCILHVHQPATTIPLIGGSFSASRLEQHEMAEFRELERRIMLKILDEYLLLCHRE TQVEAERMIVEMDEVGNGIVELVYRNGIKKLVMGAAADKYYSQEGGIDCSSTESFVRESSENNKLEICEVPSTQERDDTQELYYLLDQAMLEAEYLKQET LEESHKRRAAEKIALNAIRRVTLIGACQESYALIYEYMPNGNLEDQLNCKNDTPPLPWQARIRLATELCSVLIFLNSSKPNSIVHGDLKPSNILLDANLG CKLSDFGIFRALPGSGNNAAEATLYHVTDPKGTFHYLDPHFLTTRELSPKSDTYSFGIILLQLLTGKSAVGIANETRLAMNEGILSFLDQSAGVWPFLQH GHWEAEGAWCWCSGLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	0	1
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	1.0	0.9023
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	3.0	0.8849
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10001537 [exp]	3.5	0.8700
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	3.9	0.8662
AT5G45190			Cyclin family protein (.1.2)		Lus10018272 [exp]	5.1	0.8852
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	6.9	0.8500
AT5G61280			Remorin family protein (.1)		Lus10034714 [exp]	7.3	0.8495
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	8.5	0.8185
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037732 [exp]	9.2	0.8320
AT1G71150			unknown protein		Lus10007946 [exp]	10.2	0.8373

Compare expression of checked genes

Lus10014771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.