Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 822 / 0 U-box domain-containing protein kinase family protein (.1) AT3G49060 415 / 9e-132 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 350 / 5e-107 U-box domain-containing protein kinase family protein (.1) AT4G25160 348 / 2e-106 U-box domain-containing protein kinase family protein (.1) AT5G61560 347 / 2e-106 U-box domain-containing protein kinase family protein (.1.2) AT5G61550 347 / 1e-105 U-box domain-containing protein kinase family protein (.1.2) AT5G57035 338 / 5e-103 U-box domain-containing protein kinase family protein (.1) AT2G19410 330 / 6e-100 U-box domain-containing protein kinase family protein (.1) AT1G78940 313 / 8e-95 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G26150 311 / 1e-93 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036362 [exp] 1610 / 0 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036363 [exp] 518 / 1e-172 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 516 / 4e-171 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10039245 [exp] 511 / 3e-168 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036359 [exp] 469 / 1e-152 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10027490 [exp] 436 / 3e-140 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10016557 [exp] 404 / 2e-127 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 393 / 4e-123 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10020185 [exp] 314 / 1e-96 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G160200 [exp] 994 / 0 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 974 / 0 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 580 / 0 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 490 / 1e-160 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.009G030400 [exp] 409 / 2e-129 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 401 / 2e-127 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 338 / 1e-102 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G002400 [exp] 318 / 7e-96 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G147000 [exp] 317 / 1e-95 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G225300 [exp] 304 / 1e-90 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10014772 pacid=23150208 polypeptide=Lus10014772 locus=Lus10014772.g ID=Lus10014772.BGIv1.0 annot-version=v1.0 ATGGCTGTGATGAGTCCGGCGCCACCAATTCCGCAGCTGGCCAGTCCGATGAGTCTTGTTGAGTTTGGAGGCTCGAGGAGGATGAATAGCAGTAGGGGCA GTAGCAGCAGCATCGGAGAGGTTTCGAGAGGCAGCAGCAGCAGCAGCATCGGAGAGATTTCGCCGGTGGCGAGAGTTATTGATGAGAAGATTTATGTCGC CGTGGGGAAAACCTTCGATAAAAGCAAGTCGGTGGTTGTCTGGGCTTTGCAGAATTCGGGAGGGAAGAAGATTTGTGTCCTTCACGTCCATCAGCCCGCT CAGATGATTCCTCTCTTGGGTGGCAAATTTGAAGCGAGTACGCTTAAGGAGCGGGAAGTCAATGCATACCGTGAGATTCAGAGAGGGAAAATGCGCAAGG TCCTTGCTGAATATCTTCGTCTATGTGGACGAGCTGGGGTCCGAGCTGAAGCAATGGTTACTGAGAAGGAATCCATTGAGGAAGGAATCCTTGAACTTAT TTCTAAGCATGGGATTAAGAAGATTGTGATGGGAGCTGCAGATAACAGTCGCTACTACAAGAATATGACATCCCTCAAGTCGAAGAAGGCCATTTCCGTG AGGGAAAAAGCACCTGGTTCTTGCCACATATGGTTTGTTTGCAAGAGCCATCTTATATACACAAGGCATGCTACTTTGCATCAAGATGATGAATCTGTTT CTTCTCTGCCACAAGGAAGGCCAAGTATAAGAACTGGAAATTTGCCCCGGTCCCATTCAGTTTATGTGAAGCCATCGAACCTGATTCAAGATCTGTTTAG GAGGGCGCCCTCTCTGAATCTTGATGCCAGATCCAATGTGGGGAGAGAAATGCTCCAAACTATGCCAGATGATACTAGAGCAGTGGTAACACCACATAGG TCAGATGCTGAAGAGAATTCTTACATTCATGAGTCCAGGAGTACTTCCAGTGGTTCTGTTCTGTCATCGTGTTCTTCTGGAGGAATGGCCAATCTTGCCA TTGTTCCTAGTACGTTGACTGTAGGGAGTGACATGGCTGCAGAGATGAGCACAGTTCCTGAGCTTACAGACGATATTTGTCATACTTCTCCCCCCAGTGT ACCGGAAATAACTGTGGTGGATCCTCTTTATGAACAACTTAAGCGAACAATGGAAGAGTCTGTGAACTCCGAGAGAGAAGCACTTGAGGAAGCAACCCGA CGTGCCAAAGCTGAAAAGAATACCATTGAGGCAATGCACAGGGTCAAGGCATTGGAAAGCCTTTATGCTGAAGAGTCAAAGCAAAGAAAAGATATTGAAC AGGCAATAGCAAGAGAACATGAAGAACTTGCAATAATGATTAATGACCAGGAAAAAGTCACAGAAGAACTTTGCCTTGCTTCCGATCGTAAATGTATGCT AGAAACCCAAATTAATGAAGTTGATCGGACAGCTACAGAGTTGGAGCAGAAGATCTTCTCTGCTGTTGAGCTTCTACAGAAATACAATAAAGAGCGAGAA GAACTGCAGCTGGAGCGTGATAATGCACTAAGAGAAGCTGAAGAGCTGAGGAGAAGTAGAGCAGAAACCTCATATGGATCAACAACCGAGTTCTTCTCTG ACTTCAGATTCTCGGAGATTGAGGAGGCAACTAATAACTTCCATCCATCTCGTAAGATTGGGGAAGGTGGGTATGGTAGCATTTATAGAGGGGTACTGCA TCACACTGAAGTGGCTATAAAGATGCTCCATGCCAATAGCATGCAAGGTCCCTCGGAGTACCAACAAGAGGTTGATATCTTGAGCAAGATGAGGCATCCA AATCTTGTCACCCTTATTGGAGCCTGTCCTGAAGCCTGGACTCTTATCTATGAGTACCTTCCAAATGGAAGTGTTGAAGATAGACTGAGCTGCCGGGACA ACACTCCTCCTTTATCTTGGCAAACTCGAATACGGATAGCCGCTGAGCTTTGCTCGGTTGTCATGTTTCTTCACTCAAGTAAACCACATAGCATTGTTCA CGGTGATCTCAAACCAGCAAATATTCTCTTAGATTCCAACTACGTCAGCAAGCTCAGTGACTTTGGGATCGCTCGGCTACTTCAGCAAGGCGAAGGTTCA GGTATCGGCGAAACAATTTGTTGCAGGACTGACCCAAAGGGTACTTTTGCATATATGGATCCAGAGTTTCTTTCCTGTGGGGAGCTTACTCCAAAGTCCG ATGTTTATTCATTCGGAATAATACTGTTGAGATTGTTAACTGGACGACCAGCTTTGGGTCTAGTCAAGGAAGTGCAGTATGCGTTAGACAAAGGCAACCT GAAAACTCTGTTAGACCCTTTGGCAGGGGACTGGCCTTTTCTGCAAGCCGAGCAGCTAACTCGGTTAGCACTGCGCTGCTGTGAGTTAAACCGGAAAAAC CGGCCTGATCTTGCATCCGAGGTATGGAGAGTGCTCGAACCTTTGAAGGCTTCATGTGGAGAGTCGTCAAACTTTCGGATTGATTCAGAAGAGCCACGTC AGCCTCCTCTTTACTTCATATGCCCCATTTTCCTGGAACTGATGAGGGATCCACATGTAGCAGCCGATGGATTTACGTACGAAGCAGAAGCGCTGAGAGG ATGGCTGGACAGTGGACTAGAGACTTCGCCAATGACCGATGCGAAGCTTGAGCATAAAAATCTTGTGCCAAACCGCGCACTGCGTTCTGCAATCCAAGAG TGGCTTCAACAGCAATAA
AA sequence Show only first row Show all	>Lus10014772 pacid=23150208 polypeptide=Lus10014772 locus=Lus10014772.g ID=Lus10014772.BGIv1.0 annot-version=v1.0 MAVMSPAPPIPQLASPMSLVEFGGSRRMNSSRGSSSSIGEVSRGSSSSSIGEISPVARVIDEKIYVAVGKTFDKSKSVVVWALQNSGGKKICVLHVHQPA QMIPLLGGKFEASTLKEREVNAYREIQRGKMRKVLAEYLRLCGRAGVRAEAMVTEKESIEEGILELISKHGIKKIVMGAADNSRYYKNMTSLKSKKAISV REKAPGSCHIWFVCKSHLIYTRHATLHQDDESVSSLPQGRPSIRTGNLPRSHSVYVKPSNLIQDLFRRAPSLNLDARSNVGREMLQTMPDDTRAVVTPHR SDAEENSYIHESRSTSSGSVLSSCSSGGMANLAIVPSTLTVGSDMAAEMSTVPELTDDICHTSPPSVPEITVVDPLYEQLKRTMEESVNSEREALEEATR RAKAEKNTIEAMHRVKALESLYAEESKQRKDIEQAIAREHEELAIMINDQEKVTEELCLASDRKCMLETQINEVDRTATELEQKIFSAVELLQKYNKERE ELQLERDNALREAEELRRSRAETSYGSTTEFFSDFRFSEIEEATNNFHPSRKIGEGGYGSIYRGVLHHTEVAIKMLHANSMQGPSEYQQEVDILSKMRHP NLVTLIGACPEAWTLIYEYLPNGSVEDRLSCRDNTPPLSWQTRIRIAAELCSVVMFLHSSKPHSIVHGDLKPANILLDSNYVSKLSDFGIARLLQQGEGS GIGETICCRTDPKGTFAYMDPEFLSCGELTPKSDVYSFGIILLRLLTGRPALGLVKEVQYALDKGNLKTLLDPLAGDWPFLQAEQLTRLALRCCELNRKN RPDLASEVWRVLEPLKASCGESSNFRIDSEEPRQPPLYFICPIFLELMRDPHVAADGFTYEAEALRGWLDSGLETSPMTDAKLEHKNLVPNRALRSAIQE WLQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	0	1
					Lus10035928 [exp]	2.2	0.8363
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	2.8	0.8230
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	2.8	0.8470
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10017418 [exp]	4.7	0.8012
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	8.1	0.8440
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	8.7	0.8519
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10021209 [exp]	8.8	0.8192
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	9.2	0.8355
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	9.9	0.8107
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	10.6	0.8312

Compare expression of checked genes

Lus10014772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.