Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40190 188 / 7e-56 LEW3 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007500 [exp] 235 / 1e-73 AT2G40190 745 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10028977 [exp] 229 / 2e-71 AT2G40190 751 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007909 [exp] 197 / 2e-63 AT2G40190 152 / 3e-45 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10007501 [exp] 135 / 4e-39 AT2G40190 103 / 2e-26 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008976 [exp] 105 / 6e-27 AT2G40190 192 / 1e-59 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10008975 [exp] 80 / 4e-18 AT2G40190 186 / 4e-58 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10010207 [exp] 66 / 4e-13 AT2G40190 111 / 6e-30 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10021233 [exp] 55 / 1e-09 AT2G40190 52 / 3e-09 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Lus10031614 [exp] 51 / 4e-08 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G095500 [exp] 198 / 1e-59 AT2G40190 735 / 0.0 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1) Potri.015G093000 [exp] 68 / 2e-13 AT2G40190 248 / 2e-81 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10014773 pacid=23150184 polypeptide=Lus10014773 locus=Lus10014773.g ID=Lus10014773.BGIv1.0 annot-version=v1.0 ATGGCGACCGTCACTCTCCTCATTCTATATCTTCATAGCTCTCTCATCTTCTCCTTCATCGCTTTCCTTATACTCACCTCCCGCCGGAACCGCCAAAAAG CCATCGGTTTCTTCCACCCTTACACAAACGACGGCGGCGGCAGCGAATGCGTCTTATGGTGCGCAGTCAAATCCATTCAGGAAGAAGTCCCCGACCTCGA TTGCATCGTCTACACCGGTGATCATGACGCATCTCTTCAGTTCCTTCTCGTCCGCGGAACCGACCGATTCGGCGTCCACTTGCTCCGTCCGCCGAAGGCG GTCCATCTCTACCGAAGGAAATGGGTGGAGGAGTCCACTTATCCTCGATTCACCATGGTCGGACAGAGCCTCGCTTCAATCCTACTGTCCTGGGAAACTC TATCCAAGTTCACTCCTCTTTGTGTGCTACACTCATTACCCGACGATCCGCTTGGATATGATCTCCCGCGTTCGTCGCAGGAGCTTTGGCGTATTCCTAA CCGAATCAAGCGAGTCTATCCTCCTTGTGATACATCAGGGCTACAGGTGCTTCCTCTAGAAAGACCCGTTGAAACTCCAGTGTTTATATCAGTATCTCAG TTCCGTCCTGAGAAGGCGCATCCTCTGCAATTTGAAGCCTTCTCTCTTGCACTTGCGAAGTTGGATGCAGATGGAGATGGAGATGTGGAATTCCATCAGA ATGTCATGTACAGGGACTTGATAAAGCTACTGGGAGGTGCCGTTGCTGGATTGCATTCTATGATAGACGAGCACTTCGGCATCAGCGTTGTTGAATACAT GGATGCCGGAGCCATACCGATAGGTGACCGGCCTACTTCTTTACCGGTCTCCGGTAACCGGACGACTACCCCAGCCGCCACCCTCGTCACTGAAGAGGAA CACCATGCTCCGGTCACCGTGCCTAGCCTCCAATCGCTTGATTATTCCTTCAACATATGGCCTCCTTACCAAGTTCCTCAACAAAATGCTGAAATCACTC GTTGA
AA sequence Show only first row Show all	>Lus10014773 pacid=23150184 polypeptide=Lus10014773 locus=Lus10014773.g ID=Lus10014773.BGIv1.0 annot-version=v1.0 MATVTLLILYLHSSLIFSFIAFLILTSRRNRQKAIGFFHPYTNDGGGSECVLWCAVKSIQEEVPDLDCIVYTGDHDASLQFLLVRGTDRFGVHLLRPPKA VHLYRRKWVEESTYPRFTMVGQSLASILLSWETLSKFTPLCVLHSLPDDPLGYDLPRSSQELWRIPNRIKRVYPPCDTSGLQVLPLERPVETPVFISVSQ FRPEKAHPLQFEAFSLALAKLDADGDGDVEFHQNVMYRDLIKLLGGAVAGLHSMIDEHFGISVVEYMDAGAIPIGDRPTSLPVSGNRTTTPAATLVTEEE HHAPVTVPSLQSLDYSFNIWPPYQVPQQNAEITR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10014773 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	1.0	0.9469
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	1.4	0.9429
					Lus10025164 [exp]	3.5	0.9230
AT3G60720		PDLP8	plasmodesmata-located protein ...		Lus10036497 [exp]	4.9	0.9330
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	8.9	0.9195
					Lus10017801 [exp]	9.8	0.8555
					Lus10042963 [exp]	10.7	0.8992
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	12.0	0.8869
					Lus10017800 [exp]	12.4	0.8764
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	12.7	0.8924

Compare expression of checked genes

Lus10014773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.