Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01690 148 / 5e-41 ATPRD3 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036358 [exp] 469 / 1e-166 AT1G01690 165 / 1e-46 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084800 [exp] 216 / 2e-67 AT1G01690 274 / 4e-88 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1) Potri.002G160100 [exp] 208 / 3e-64 AT1G01690 273 / 7e-88 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 3, putative recombination initiation defects 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014774 pacid=23150191 polypeptide=Lus10014774 locus=Lus10014774.g ID=Lus10014774.BGIv1.0 annot-version=v1.0 ATGAAGCTGAAAATCAATAAAGCTTGCGATCTCAGCTCCATCTCCGTCCTTCCTCCTCCGCATTCAAGGAGGCTGAGTTCTGTACAACCTGGAACACACC AATCATCGCAGCTCAGATCGCAACAGTCGCAGCAATCGTTTTCGCAGGGATTTTCATCTCAGCATGGCTTGTTCTCTCAGCTCTCCCAGACTTCTCTCGA CGAAGCTTTTGTGAGCGATCAGAGACTTAACTCTCAAGAGCGGCAGAACCGAGTAAAGAAGGCATCGTCTGTCCCTCCGACTGACTGTACACGTGAAGAG AGTCAAATGCCTAATTCGAGATCTTCCGTCACTCTAATGCGCAAGTGGAGTCGTGGCTCTACCGGAGACGGCAAATGTATGTGGACATCAGCAGGATTCT GCCAAGTCAGTGATGAGCTTGAGCATCGCATTGGGACGATAGAGACTTCACTGAACAAGTTTGGCATGATGCTGGATTCTGTTCAACGTGATATAATGCA AGTAAATGAAGGAACAAAAGAAGTATTGCTGGAGGCTATGAACGGATTCTTTAATGATGGTTTCTTTAAGCAAGTTGTTGACCGGAACTTTTGTTCAGTG GATGGGATCCGGCAGAAGTTACTTGTCCTTGACACCTCACTGCAAACAGTGAACAAGGGACTTGGAGATGTCAAATCCACCTTTGATGAAAGCTTGAAGT CTATGACGGAACAGCACAAAAACGATGCATCAAACGATAGAATACAAGAGATGTCGCTTCTGTTATCTTCCTTACCTGGACAGATGGAAGCCTCTCTACT CAAACTACAAGATACGTTTCATGCGAGCTGTATTCAGGAAATGCAGTCCACAATGCGGGAAAGAGGATCTAGAATTAACATCAACTCAGACGAGGAGATT GACGGAGGGCTGTTGTGCTTAATCCACCCATATGAAAAAGGTTGGTAA
AA sequence Show only first row Show all	>Lus10014774 pacid=23150191 polypeptide=Lus10014774 locus=Lus10014774.g ID=Lus10014774.BGIv1.0 annot-version=v1.0 MKLKINKACDLSSISVLPPPHSRRLSSVQPGTHQSSQLRSQQSQQSFSQGFSSQHGLFSQLSQTSLDEAFVSDQRLNSQERQNRVKKASSVPPTDCTREE SQMPNSRSSVTLMRKWSRGSTGDGKCMWTSAGFCQVSDELEHRIGTIETSLNKFGMMLDSVQRDIMQVNEGTKEVLLEAMNGFFNDGFFKQVVDRNFCSV DGIRQKLLVLDTSLQTVNKGLGDVKSTFDESLKSMTEQHKNDASNDRIQEMSLLLSSLPGQMEASLLKLQDTFHASCIQEMQSTMRERGSRININSDEEI DGGLLCLIHPYEKGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01690		ATPRD3	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10014774 [exp]	0	1
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10030363 [exp]	1.7	0.7712
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	23.7	0.7236
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004031 [exp]	46.5	0.6140
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036336 [exp]	57.6	0.5983
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10017241 [exp]	76.2	0.6207
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	158.0	0.6071
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Lus10040703 [exp]	158.9	0.5900
AT5G50170			C2 calcium/lipid-binding and G...		Lus10015665 [exp]	226.5	0.5742

Compare expression of checked genes

Lus10014774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.