Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18500 423 / 1e-145 DNAse I-like superfamily protein (.1.2.3) AT1G73875 340 / 3e-113 DNAse I-like superfamily protein (.1) AT5G11350 202 / 1e-57 DNAse I-like superfamily protein (.1) AT3G58560 120 / 3e-29 DNAse I-like superfamily protein (.1) AT3G58580 117 / 5e-28 DNAse I-like superfamily protein (.1) AT1G31500 100 / 6e-23 DNAse I-like superfamily protein (.1.2.3.4) AT1G31530 57 / 9e-09 DNAse I-like superfamily protein (.1) AT1G02270 55 / 8e-08 Calcium-binding endonuclease/exonuclease/phosphatase family (.1) AT5G54130 52 / 4e-07 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036357 [exp] 798 / 0 AT3G18500 422 / 2e-145 DNAse I-like superfamily protein (.1.2.3) Lus10032490 [exp] 327 / 9e-108 AT1G73875 446 / 3e-154 DNAse I-like superfamily protein (.1) Lus10008086 [exp] 201 / 2e-57 AT5G11350 526 / 9e-178 DNAse I-like superfamily protein (.1) Lus10013119 [exp] 197 / 9e-56 AT5G11350 536 / 0.0 DNAse I-like superfamily protein (.1) Lus10015981 [exp] 119 / 8e-29 AT3G58580 872 / 0.0 DNAse I-like superfamily protein (.1) Lus10016206 [exp] 119 / 1e-28 AT3G58560 944 / 0.0 DNAse I-like superfamily protein (.1) Lus10029338 [exp] 119 / 1e-28 AT3G58560 945 / 0.0 DNAse I-like superfamily protein (.1) Lus10012293 [exp] 114 / 7e-27 AT3G58560 949 / 0.0 DNAse I-like superfamily protein (.1) Lus10026203 [exp] 103 / 4e-24 AT1G31500 458 / 2e-162 DNAse I-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057100 [exp] 330 / 4e-109 AT1G73875 502 / 2e-176 DNAse I-like superfamily protein (.1) Potri.018G032300 [exp] 207 / 2e-59 AT5G11350 560 / 0.0 DNAse I-like superfamily protein (.1) Potri.016G061700 [exp] 124 / 2e-30 AT3G58560 926 / 0.0 DNAse I-like superfamily protein (.1) Potri.006G195600 [exp] 120 / 3e-29 AT3G58560 904 / 0.0 DNAse I-like superfamily protein (.1) Potri.003G106000 [exp] 97 / 1e-21 AT1G31500 457 / 1e-160 DNAse I-like superfamily protein (.1.2.3.4) Potri.015G004200 [exp] 57 / 1e-08 AT5G54130 719 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.012G007600 [exp] 56 / 4e-08 AT5G54130 721 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.002G182500 [exp] 46 / 3e-05 AT5G54130 600 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4) Potri.014G108200 [exp] 45 / 8e-05 AT5G54130 620 / 0.0 Calcium-binding endonuclease/exonuclease/phosphatase family (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10014775 pacid=23150231 polypeptide=Lus10014775 locus=Lus10014775.g ID=Lus10014775.BGIv1.0 annot-version=v1.0 ATGAATAGTTGCTGCGGCAGCCGAGGCCTCTCGTCTTGGCCCACCGCCATGCTCCCGGCCTCCCTCACCCGACGACTTAGCTTCTCCACAACTTCTCAGC CTGCTCTTTTCCTCTGCTCTTCCAAATCCACCGTTGACTCACTTTCTTCTTCACAGTCTCGTTCACGTGATCGTCCATTCTACAATCCTCTCGGCCGCCT CTGGATCGAAGCCGATGATCGTTGTCCACCGTCTCCATCACCATCACAAGAGAGATTCACCGTTGTTTCTTACAATATATTGGGGGAACGAAACTCTTTC AACCACCCGGACCTATACTTAGACGTTCCGGCTTCGTATTTGAATTGGGAGTATCGCAGAAGGCTCATTTGTGAAGAACTTATTGGATACGATTCTGATA TCATCTGTCTTCAGGAGGTGGATAGGTACTTTGATTTACTGAAGGTCATGCAGAAAGCTGGATACGAGGGTTCTTATAAGCGATGCACTGACGATAAGAT TGATGGATGTGCTGTGTTCTGGAAAGCTGATAAGATGCGGCTCTTAGACGGAGAAAGCATTGAATTTAAGCAACTCGGTCTTCGCGACAATGTTGCTCAG ATACTAGTTTTTGAGACATCTAGAGCTGAACCAAGAAGGATCCTGATTGGTAACATCCATGTGATCTTTCGCCCAAGTCGAGGAGATGTCAAATTAGGTC AAATTCGTTATCTCTCTTCAAGGGCACAGATTCTCTCAGAAAAATGGGGGAATATCCCTGTTATTCTCACTGGTGACTTCAATAGCACTCCCCAGAGTGC AATTTACAAGTTCTTGTCCTCGTCCAAGTTGAACATAAAGTTGCACGATAGGAAAGACTTGTCTGGGCAGAGGAACTTCCATCCCACTCAAGTTTTTGGT ACCAAGCGAGAAACGGGAAGCCCTTTGATATTAATGGACAGGCATCTAAACAACAACTGGACAGCTGAAGAAGTTACGGCTGCAACGGGCCACTCTAACC GTGATTTTGTTAAACACCCTTTGAAGCTCAGCAGCTCATACGCCACTGTTAAAGGTTCCGAAAGAACGAGAGGGCTCAATGATGAACCTCTAGCAACGTC TTTCCACTCGAAATTTGTCGGTACTGTTGACTACTTATGGCATTCTAATGGAGTTCAAACTATGGGAGTTCTGGACACTCTTCCGTTGGATTTCCTCAAG AGGATCGGTGGCCTCCCTTGCAAGACGCTAGGAAGTGATCACTTAGCTTTGGTTTCGGAATTCGCCTTCACAGAAGTAACTGAAAAGAACATTGCAGACG ACACAGTTCAATCTACAAGCTCGGCATCTCCAAGGTTATAA
AA sequence Show only first row Show all	>Lus10014775 pacid=23150231 polypeptide=Lus10014775 locus=Lus10014775.g ID=Lus10014775.BGIv1.0 annot-version=v1.0 MNSCCGSRGLSSWPTAMLPASLTRRLSFSTTSQPALFLCSSKSTVDSLSSSQSRSRDRPFYNPLGRLWIEADDRCPPSPSPSQERFTVVSYNILGERNSF NHPDLYLDVPASYLNWEYRRRLICEELIGYDSDIICLQEVDRYFDLLKVMQKAGYEGSYKRCTDDKIDGCAVFWKADKMRLLDGESIEFKQLGLRDNVAQ ILVFETSRAEPRRILIGNIHVIFRPSRGDVKLGQIRYLSSRAQILSEKWGNIPVILTGDFNSTPQSAIYKFLSSSKLNIKLHDRKDLSGQRNFHPTQVFG TKRETGSPLILMDRHLNNNWTAEEVTAATGHSNRDFVKHPLKLSSSYATVKGSERTRGLNDEPLATSFHSKFVGTVDYLWHSNGVQTMGVLDTLPLDFLK RIGGLPCKTLGSDHLALVSEFAFTEVTEKNIADDTVQSTSSASPRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	0	1
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	1.0	0.9188
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	2.4	0.9172
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10015007 [exp]	3.5	0.8758
AT2G03810			18S pre-ribosomal assembly pro...		Lus10026682 [exp]	6.3	0.8863
AT5G59400			unknown protein		Lus10016531 [exp]	7.3	0.8698
AT2G21960			unknown protein		Lus10005779 [exp]	8.1	0.9174
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	9.9	0.8790
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	13.1	0.8851
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	13.4	0.8697
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	13.6	0.8661

Compare expression of checked genes

Lus10014775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.