Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00440 196 / 2e-52 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT2G45900 157 / 1e-39 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT3G61380 114 / 5e-26 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G01695 100 / 6e-22 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) AT1G07620 69 / 7e-12 ATOBGM GTP-binding protein Obg/CgtA (.1) AT1G63670 67 / 4e-11 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) AT5G02390 60 / 5e-09 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036356 [exp] 1378 / 0 AT4G00440 241 / 6e-68 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10042850 [exp] 445 / 2e-143 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10028147 [exp] 337 / 1e-106 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10018833 [exp] 336 / 2e-101 AT3G61415 457 / 1e-153 SKP1-like 21 (.1.2) Lus10017797 [exp] 206 / 3e-56 AT4G00440 115 / 3e-26 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10028148 [exp] 74 / 7e-14 AT4G00440 89 / 3e-19 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10002008 [exp] 75 / 2e-13 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 69 / 1e-11 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10016715 [exp] 67 / 4e-11 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084600 [exp] 389 / 4e-122 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.002G160000 [exp] 382 / 5e-119 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.001G103400 [exp] 99 / 5e-21 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.001G239500 [exp] 71 / 3e-12 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 70 / 5e-12 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.016G095500 [exp] 70 / 6e-12 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10014776 pacid=23150154 polypeptide=Lus10014776 locus=Lus10014776.g ID=Lus10014776.BGIv1.0 annot-version=v1.0 ATGGGGAAAAGATCACAGAAGAGTTCTCATGTTCAATGTGAGAAGCCGGGATGTATGTGGAGCATAATGAGCATGTTGGATTTCCGATATGCTCGAATCA CTCATAAGTTGCTTCTCGATAGGCGATTCGAGAGCCGCAATCGTGCTGGTCTTCTGTTGTGGCAGGATTGTGAAGAAAATGTGGACATAACACGCCGGCC AAGTGTGAAGGATCTCATAGAGGAAGATTTGCTAAACGAGCAATTATCTAAGAGTGATGATCCCACCTACTGTGCTGTTTCTGAACTGCCTTCCTATAAT GGTGATATAGGTGGAACAATAGATGAGTTCTGCCATCAGAGAAACAGCAATTGTGCGAAAAACGACCAAGGAAACGACGAAATGCATCAGCTTGACAATC AAAGTCCTGAACTTGAAGAGAAACTCAAGGAGATCTTGACTCTTTTTATTAGTCAAAGACTCGCCGGTGACAGGAATCATCAAGCGGAGGATAATGTCAA TGAAGATGTTCATCACTCTCAGGAACTCCGGGATGCACTTCGAATTATAAGCTCCGACGAGGAATTGGTTCTGCAATTCCTGCAGGGGCAAAGATCATTT CTTGGGAAATACTTCGAGAAGAAGCCGAGGAATTCTCAGTTACAGAATGATGATGAGCATTCACCAGAGCAAGCCAGTGAAGTTTCAGCAGCAGCAACAA CAAAACAGCGGAAATTCTTCAGGAAAAAGTCGAAATCGCTCGAAAAGACCGTTCCTTTAGGAAACAACTCGCCTCAAGCTACGAACAGGATTGTCATTTT GAAGCCGGGACTGCAGAATATGGAAACGAAAATTGGTCTTGTCTCATCACATCAGTCTGAAATGACCAAGGGAGGTATTGAGAGGAGCAATTCCTCCCAT TTTTCCCTCACTCAGATCAAAAGAAGGTTGAGAAATGCCATGGGAAGAGAGCGGCAAGAAGGTTCAAACAATCGTAACAATGGAAGAAGTTCTGCAGCTA AAGAACATTTCTTTACTGAAATAATTGCCAGACACCCCATGAGCTTCAGTAAAAGAAAGAATTCTGCTGCCAAGGCTATAGAATGTAACAAAGGGAAGGA GCATCAAGAAATTGGTAATAATCTTTGGGAAGCTAAGAAACATCTTTCGGAAGTACTTACTAACTATCCTAATAAAGGAGAAATTTATCCAAAGGCCAAA CCCCTTGGCCGGATTCTCTCTTTCCCGGAGCACAATTCTTCTTCTAGTTGTTGCAGCTCCGGGAGCGATTTCTGGTACGGTTTTGTACCAGCACGGATGA GCTTGCCAAACATCGAAAAGTTTCAGAGACGGGGAAGTAATCTGGGCCGTATATCGCTGTGTTCAGATCTGTCTGATGACAACAATAGCTCTGATAACAA AGCACAGACTTCATCAGACCCAAGTTCAAGTACCTTACAAGAGCTTTCATTACCTCATTCTGATTTGCCTGTTGATGATGGTGGAGAAAAGAACGTAGAT GAGGCGACAATTGAAGACTTCAAAATTATAGCCTCAGAAGAGATCAATGTTATTGATGATACTTGTGAAACAAGTAGCTGTACCGACGCTGTAGATGAAA AAAATGGCGATTCTTGCGAGGTTCATGACGAGAGAAGTGGTTCTGAGCTCTCGGATCATGAGTCTTCTCCATCCAAAAGGTGTCATGATCTAGAGTCCAA TGAGCTGTTCGGGCGGCCCAGTCCTATATCTGTTCTTGACCAGATTTTTGTTGAGGACATCAGTCCAGCTGCTACCAGATATCAATCAGTTCAACCCCGA AGAATTCAGTTTGAAGAAGAGGTTGACAGTTTCGACAGTACCGATGAAGACATCCACTTGAAAACCAGTACAGAATCAGCAGCAAAAGACTGCATATTCG AGTTCATAAAGATCACACTCCTATCATCCGGTTTAAACTGGGAGGAGTTGTATCTAACGTCAGATTCTCCAGACCAGATTCTCGATCCGTCAAGTTGCCA CGACTCCGAGCTCTTCCCTAACCAACTTTGTCACGACAAGCAACTCCTATTCGACTGTACAGACGAGGCTCTCGCGGAAGTTTACGAACGCTATTTCAGT TGCTCCCCGGGGCTATCGTTGGGGAAGCCTCCGATTCGACCTGTCCCCGACATAGAGAATACTATCCATGAGGTGTGGGAAAGGGTCTATTGGCATCTGC TTCCATTCCCAGCTCCACATAGTTTGGAACAGATAGTCACAAAGGACATGGATAGAAACAGCTCTAATTGGATGGACCTTCGAGGCGATGCTCAGACCGT GATTTTCGAAATCGGTGAAGCCATTTTCGATGATCTTGTAGAAGGGTCCATACTTGGCTACTGTGTAAATAAGTTGGATGATGGTGAGTGCTTCTGCATC AACTTTTAA
AA sequence Show only first row Show all	>Lus10014776 pacid=23150154 polypeptide=Lus10014776 locus=Lus10014776.g ID=Lus10014776.BGIv1.0 annot-version=v1.0 MGKRSQKSSHVQCEKPGCMWSIMSMLDFRYARITHKLLLDRRFESRNRAGLLLWQDCEENVDITRRPSVKDLIEEDLLNEQLSKSDDPTYCAVSELPSYN GDIGGTIDEFCHQRNSNCAKNDQGNDEMHQLDNQSPELEEKLKEILTLFISQRLAGDRNHQAEDNVNEDVHHSQELRDALRIISSDEELVLQFLQGQRSF LGKYFEKKPRNSQLQNDDEHSPEQASEVSAAATTKQRKFFRKKSKSLEKTVPLGNNSPQATNRIVILKPGLQNMETKIGLVSSHQSEMTKGGIERSNSSH FSLTQIKRRLRNAMGRERQEGSNNRNNGRSSAAKEHFFTEIIARHPMSFSKRKNSAAKAIECNKGKEHQEIGNNLWEAKKHLSEVLTNYPNKGEIYPKAK PLGRILSFPEHNSSSSCCSSGSDFWYGFVPARMSLPNIEKFQRRGSNLGRISLCSDLSDDNNSSDNKAQTSSDPSSSTLQELSLPHSDLPVDDGGEKNVD EATIEDFKIIASEEINVIDDTCETSSCTDAVDEKNGDSCEVHDERSGSELSDHESSPSKRCHDLESNELFGRPSPISVLDQIFVEDISPAATRYQSVQPR RIQFEEEVDSFDSTDEDIHLKTSTESAAKDCIFEFIKITLLSSGLNWEELYLTSDSPDQILDPSSCHDSELFPNQLCHDKQLLFDCTDEALAEVYERYFS CSPGLSLGKPPIRPVPDIENTIHEVWERVYWHLLPFPAPHSLEQIVTKDMDRNSSNWMDLRGDAQTVIFEIGEAIFDDLVEGSILGYCVNKLDDGECFCI NF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00440			Protein of unknown function (D...		Lus10014776 [exp]	0	1
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Lus10007444 [exp]	2.8	0.8201
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10013603 [exp]	3.9	0.8200
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Lus10037094 [exp]	5.6	0.8494
AT1G19130			unknown protein		Lus10039920 [exp]	13.7	0.8078
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10039680 [exp]	16.6	0.7892
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	19.1	0.8291
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	20.7	0.7797
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	23.2	0.7865
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	23.4	0.7761
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	27.3	0.7278

Compare expression of checked genes

Lus10014776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.