Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00450 1832 / 0 CCT, CRP CRYPTIC PRECOCIOUS, CENTER CITY, RNA polymerase II transcription mediators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036354 [exp] 3966 / 0 AT4G00450 1837 / 0.0 CRYPTIC PRECOCIOUS, CENTER CITY, RNA polymerase II transcription mediators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G084500 [exp] 2769 / 0 AT4G00450 1845 / 0.0 CRYPTIC PRECOCIOUS, CENTER CITY, RNA polymerase II transcription mediators (.1) Potri.002G159900 [exp] 2767 / 0 AT4G00450 1880 / 0.0 CRYPTIC PRECOCIOUS, CENTER CITY, RNA polymerase II transcription mediators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09497 [flax] [poplar] Med12 Transcription mediator complex subunit Med12
Representative CDS sequence Show only first row Show all	>Lus10014778 pacid=23150222 polypeptide=Lus10014778 locus=Lus10014778.g ID=Lus10014778.BGIv1.0 annot-version=v1.0 ATGCAAAGGTATCATGCTGCCAGTTCCACTAATACGGCAAATAACAGTGCACTTGGTGGTGCATCTGCTAGGGATGCCTCCCGGATTGATTCTTCTTCTT TGTCATCCAACTTTTCCGTAAACTCTAGCCGTTTGACTCCACTGGTAGGATACAAGTTGAAGTGTGAGAAAGAACCTCTAAACTCCCGACTTGGGCCACC TGATTTTCATCCACAAACTCCCAACTGCCCAGAGGAGAACCTCACCAGAGAATATGTACAATCTGGATACAGAGAGACAGTTGAAGGACTTGAGGAAACT AGAGAGATCTCATTGACTCAGATTCAAACATTCAATAAGCCTGCCGTGATAAAGTGCAAAGAGTCGATCCGCAAGTGTTTGAGAGCTATCAACGAGTCTC GTGCTCAGAAGCGGAAGGCTGGTCAAGTTTATGGGGTTCCTCTGTCTGGTTCATTACTCACTAAATATGGTGTCTTTCCTGAACAAAAGCCATGCAGTGA AGACTCCAAGAAGAAATGGATTGAGGCTTTGGCACAGCCGCATAAGAGATTGCGTTATTTAGCTGATCATGTCCCTCATGGGTACCGGAGGAAAGCACTT TTTGAAGTTCTTGTCAAGAATAATGTACCACTGCTTAGGGCAACTTGGTTTATTAAAGTTAGTTATCTTAATCAGGTCAGGCCAAATTCCTCAACCATTG CTTCTAGTACACAAGATAGGAGTCAGTTGTTGCGAACAGAGTTGTGGACAAAAGATGTTATTGAGTTTTTGCAACATCTTCTGGACGAATTCTCCACCAA AACCAATAGCCATTCTATTCCACATAACAGAGATCGATCCCAGATGCTCTACGCGGGCTCAATGCAGCAGAAGAATGATCCTTCACTGGTTTCTGTCGAC GGGGATGAGCCTTCTCTAAATTTCAAGTGGTGGTATGTTGTGCGATTGCTGCATTGGCACCATTCTGAAGGGCTGCTTCTTCCTTCTCTAGTAATTGATT GGCTTCTTGGTCAACTACAGGAAAAGGACTTGCTTGAGATTTTGCAGCTGTTTCTGCCCATCATATATGGCTTCTTGGAAGCAATTGTCCTGTCACAAAC ATATGTTCGTACTCTTGCAACTGTTGCTGTTCGTTTCATTCGTGAAACATCACCTGGTGGGTCAGATTTGGTGGATAATTCTAGGAGGGCCTATACTACT TCTGCTTTGGCGGAGATGCTTCGGTATTTGATATTGGCTGTGCCCGATACGTTTGTTGCTCTGGATTGCTTTCCTCTGCCACCGAGTGTATTGTCTTACA CAGCAAGTGATGGAACTTTTGTGTCGAAGTCATTGGAGGATGTGAGAAGGGTGAAAGATGGTTCAACAGAAGTTGGTTCCGTGTTCAAAAGCAGAGCCAT TGATTCTCAATACCAAGCTCTATCCTTTAGTCAGGTTGTTTCTTCTATTCAGAAACGTGCATATAATCTTGCAAGGGCTGTGAGCCCCGGCTACCCATGC CGTAATGTGGCTAAAGCTGTGAAGGCTTTAGACAAAGCTCTTTTTCATGGAGATATTCGAGGGGCTTATGGGTTTCTTTTTGAACAATTTTGTGATGAAG CTGTTGATGAAGGCTGGATAGAAGAAGTGAGTCCCTCTTTGAGATCTTCGTTGAAGCGGCTACGCACTGTTAATCTGTCTATTGTCTCTTCTGTTTTTTT TCTTTGTGAGTGGGCAACATCTGAATATAGGGATTTTCGGACTTCCAGACCTAATGACCTGAAGTTGACTGGAAAAGAAGACACTGCTCAGGTTTATATT GCGTGCCGTCTACTGAATCTAAAGATAAGAGATATGCAAGGTGGTCATAGAATGAAGAACGAAAAATACAAAGGCCCAAAAAGCTCCTCAGATTTGTTTG AAAGCCCTGGTCCTTTGCATGATGTCATTGTATGTTGGATTGATCAACATGAATTGGATAAAGGTAAAGGTCTGAAGCGCTTTCAGCTGCTTATAATGGA GCTAATGCGCACTGGAATATTCCACCCTCATGCATATGTGAGGCAGCTGATTATAAGTGGAATCATGGATTCAACCTTAAATGTTGGTGATCATGAAAGG AAAAAACGTCATTATCAGATGTTGAAACAGTTACCTGGATCCTTTATTGGTGACATTTTAGAAGAGGGAAAGCTCGTGGAAGGATCACTGATTTTAGAGA CTATGCGCATTTACTCAAATGAGCGCCGTCTTCTCCTTCGAGGAATTCTAAATGGATCGCTTCAAAGCTCAGTCAAATCAAGGAAAGAAGAACAGGAGAA AAAGAGTAGGATAGCACCGGCGAAGGATGATGCTCTCTCTGATCACTGGAAAACTATCAAATCTCTGTCTAGTAACTCAACTTTGAAAAAAATGAGGACT GAGTCTAAGGTGGAGAATCTCAAGGCTTCCATAGCCTTATTGTTGCAGTTCCCTAAATGCATTACGGTTTCAGATTCAGGTGTTGACGAATCTACTCTAA GTGGCAAAAGGTCTTTTGAGTCAGTCAGCAGTAAGTTAGATGTGCTAGAAGGTACACCAGGTTGTGAAGAGTGTAAGAGAGCAAAGCGGCAAAAATTAAG CGAGGAAACAAGCTCAGTCACTCAGGGACATTCTCCTGTCTCTGATGATGAAGATACATGGTGGATGAGGAAAGTGCCTAAGACCTTAGATCAGTCAAAA GTTGATCAAATTATCAAGTCATCCAAGCAAGCTCCCAAGAGTAGACAGAAAGTTGTCCGTAAAACTCAAAGCCTGGCCCAACTAGCAGCAGCTAGGATTG AGAATAGCCAAGGAGCTTCTACTAGTCACGTCTGTGAGAGTAAGATCAACTGTCCTCATCACAGAACTCCTCTTGATGGCGAGAATATTAAGACGGTAGA CAGAACCAGAGCAGGAGGAGACATTATTGTGGTTGGAAAAGCTTTAAAACAACTGCGCCTTGTGGAGAAGCGGATGATTACAGTTTGGTTAAAAACTATG GTAATGCAGCTCGTGGAGAACACTGAAAAGATTGCTTCCAAGGGAAACCAGTATAATATGCCTTATGTTCCTGATGATGATCGGAACTCCGCAAGGTGGA AGCTTGGGGAGGATGAATTATCTGTCATATTACACCTAATGGATGTCTGTAATGATCTTGTGTCAGCAACCAAGTTTCTTCTTTGGCTGTTGCCAAAGGT TCAAAATCACCAGAGTTCCACTATTCACAGTGGGAGAAGTGTAATGATGTTACAGAGGAATATGGAAAGTCATGCTTGTGAAGTGGGTGAGGCTTTTTGG TTATCATCTCTGAGAAGGTATGAGAACATGATGATTGCCATAGATCTTCTCCCTGATGTTCTGTCAACCATAATGCAGCGTCTTGCCACGCTACTCGCTT CTAATGTGAGAATTTCAGGCTCCTCAACCTTAGTTTATTCTCGATATCTATTGAAGAGATATAGCAATGTGTCAAGTATTGTAGAATGGGAGAAGAATCG CAAATCAACTTATGATAAGAGACTGATATCTGAACTCGACTCTGGTCGGTCACCAGATGGAGAGTTTGGGTTTCCTCTTGGAGTCCCAGCTGGAGTTGAT GACCCTGATGACTTCCTTCGACAAAAGATAAGTGGAAACCGAATATCCAGGGTGGGGATAGGCATGAGAGATGTAGTCCAAAGGCATATTGATGATACTT TGCATTACTTCTTAGGCAAAGAAAGAAAGATCTTTGGTGCTGGTGCACATAAAGGTCCTGCTCCTGAGAAGTTGGATGATGGACACGTGGCACATCAGAT AGTTATGGGGCTCATGGAGTGCATGCGGCAGACAGGGGGTGCTGCACAAGAAGGTGATCCATCTTTGGTGTCCTCTGCAGTTTCTGCCATTGTTAATAAT GTTGGACCAGCTATTGTGAAGATCCCAGATGTGCATCCATTCAATAATAATTCCATTGCTCCACCTACAAATTCACTAACATTTGCTCAGCGAGTTCTGC ATATCCATATAATTTGTCTGCGGTTGCTTAAGGAAGCTCTAGGTGAGCGTCAAAGTCGGGTTTTTGAGATTGCTCTAGCTACAGAAGCTTGTTCTGCTCT TGCGGCAGCCTATTCCCCTGGAAAGGCTTCTCGTGGGCAATTTCAGATGTCCCCCGATACTCATGATTCCAGTACAAATTTTTCTAATGAAACTTCGGCG AAAGGATTGTTGGGGAAAGGGACAAAAAGTGCTGCTGCTATTTCAGCTCTGGTAATTGGTGCAGTTATTTATGGTGTTACAAACTTGGAGAGACTCGTTA CAGTCTTTAGATTAAAGGAAGGACTGGATGTCATTCAATTTGTGAGGAGTACCAAAACAAACTCAAATGGTAATGCTCGTACAATCGGGGCTCTCAAGGT AGACAACCTGCTTGAAGTGAATGTTCATTGGTTTAGGGTGCTTGTTGGAAACTGTAGAACCGTATCAGATGGTTTCATAGTGGAGCTTTTGGGTGAACCT TCTATTGTTGCTCTTGCAAGAATGCAGCGAATTTTACCTCTTAGCTTGGTGCTCCCGCCTGCTTATTCAATCTTTGCCCTTGTTTTGTGGAGACCGTTTA TTCTAAGCAGTAATCTCGCAAACCGGGAAGATATCCATCTTTTATATCAGTCATTGACCGTGGCTATTGGTGATGCTATTAAACATCTTCCATTCAGGGA TGTATGTCTGAGGGACAGCCAAGGGTTTTATGATCTTGTTACTACAGATGCCTGTGATGCTGACTTTGCTGCAATATTAGATCTAAATGGTCTAGACGTT CATGTCAAGTCCATGGCATTTGTTCCTCTCCGAGGAAGGCTGTTCTTGAACTCAGTCATTGATGGTCAATTGCCGAGCTCATTATTTACACAGGAGGATA GCAAGCGCACTTCTTTACTCGGGGGATCAAAACTCCCTCACTTGGAGAATGAGATGAAGCTTATGGATAAGCTTGTCAAAGTTCTGGATGCTCTTCAGCC TGCAAAATTCCATTGGCAGTGGGTTGAGCTCAGACTTCTTCTAAATGAGCAAGCCCTTACTGAAAACCTCGAGACTCGAGACATGTCCCTCGCTGATGCT ATCCGTTCTTCCTCACCCGGTCCTGAAAAGGGGGGTGCTTCGGAAAACGAGAAAAAGTTCATCGAGTTGATCCTTACAAGGTTGTTGGTCAGACCTGATG CCGCACCCCTCTTTTCCGAGCTGGTCCATCTCTTTGGACGGTCACTAGAGGATTCAATGTTATTGCATGTTAAATGGTTTCTAGGTGGTCAGGATGTCCT TCTTGGACGAAAAACCATTAGACAGAGGCTTGTTAATATTGCTGATAGCAAGGGGCTCTCTACTAAGGCCCAGTTCTGGAAGCCATGGGGTTGGTCAAGC TCAAGGTCTGATCCAACGTTAAATAGAATAGATAAGAAGTTTGAGAATGTTGCTTCTATTGAGGAAGGAGAGGTCGTCGATGATGGTGCTGACACTAAAA AGTCTGGGAAAGGGTCTATACATATCTCTGATGTGGAATCTAACAGTGTGAGTCAACACCATGTTACTGAGAGGGCACTTATCGAGCTAGTTCTTCCTTG CATAGATCAAGGCTCTGATGACTCACGCAATACTTTTGCCAGTGATTTAATCAAGCAACTGAACAATATTGAGCTGCAAATAAACGCAGTGACTCGTGGA GTAAATAAGCAAGCAGGGACAGCCTCTCCTGGACTAGAGGGTGGTACTGGAAGCAAGGTTAGTAATCGCAAAGGTATGAGAGGTGGTAGTCCTGGACTTT CTAGACGAACATCGGGGGTTGTGGATTCTTCTCTTCCCTCACCTGCTGCTTTGCGTACTTCAATGTCGCTGCGGTTGCAATTACTGCTGAGATTACTTCC TACTATCTGTACTGACGGTGAGCCATCGGGACGGAACATGAAGCACATGCTTGCCTCTGTAATACTTCGTCTCCTTGGGAGCCGAGTTGTATACGAAAAT TCGGAGGTGTCATCCACTCGTTCTCAAAATGTTCAACCCAAGAGGGAGTCTGAATCCTTAGCATTGGAAGCTGCTAGTGTAAATTTATCTGGTGAAAGCC TCTTCGACAGACTATTGTTGGTCCTTCATGGTTTAGTGAGCAATTCCAAACCAAGTTGGTTGAAACCAAGGCCGCCTTCGAAAGCGGGCGGTGATTCTAT CAAGGATTCAACCGGTTTTGACCGCGAACTCGTAGAGGGCTTACAGAGCGACTTGGATCGTATGCAGCTACCTAGCGCTATTAGATGGCGAATCCAAGCA GCAATGCCGATTCTCCTTCCTTCTGTACGATGCTCCGTCTCTTGCCAGCCGCCAGCTGTCCCTATTGCTGCAGTTGCGGCACTTCAGCCCACAGTTTCAT CGCCCGGAAACCCGCCGCCAAGAAATTCTTCATCTACAACACGGGCTTCATCTGCTTTGCCAGGGAAGTCGTCGAAGCAAGCACCGCCACCGGCTCAACA AGATGGTGATGTCGAAATCGACCCTTGGTTACTTCTGGAAGACGGCACTGGATCCGGTCCATCCTCGGTCAATACCACTATAGTTGGCGGTAGCGACCAA GTGAATCTTCGGGCCTCTAATTTGCTCAAGGGGGCTGTACGCATCAGGCGAACAGACCTCAGTTACATTGGTGCTGTGGATGACGACAGCTAA
AA sequence Show only first row Show all	>Lus10014778 pacid=23150222 polypeptide=Lus10014778 locus=Lus10014778.g ID=Lus10014778.BGIv1.0 annot-version=v1.0 MQRYHAASSTNTANNSALGGASARDASRIDSSSLSSNFSVNSSRLTPLVGYKLKCEKEPLNSRLGPPDFHPQTPNCPEENLTREYVQSGYRETVEGLEET REISLTQIQTFNKPAVIKCKESIRKCLRAINESRAQKRKAGQVYGVPLSGSLLTKYGVFPEQKPCSEDSKKKWIEALAQPHKRLRYLADHVPHGYRRKAL FEVLVKNNVPLLRATWFIKVSYLNQVRPNSSTIASSTQDRSQLLRTELWTKDVIEFLQHLLDEFSTKTNSHSIPHNRDRSQMLYAGSMQQKNDPSLVSVD GDEPSLNFKWWYVVRLLHWHHSEGLLLPSLVIDWLLGQLQEKDLLEILQLFLPIIYGFLEAIVLSQTYVRTLATVAVRFIRETSPGGSDLVDNSRRAYTT SALAEMLRYLILAVPDTFVALDCFPLPPSVLSYTASDGTFVSKSLEDVRRVKDGSTEVGSVFKSRAIDSQYQALSFSQVVSSIQKRAYNLARAVSPGYPC RNVAKAVKALDKALFHGDIRGAYGFLFEQFCDEAVDEGWIEEVSPSLRSSLKRLRTVNLSIVSSVFFLCEWATSEYRDFRTSRPNDLKLTGKEDTAQVYI ACRLLNLKIRDMQGGHRMKNEKYKGPKSSSDLFESPGPLHDVIVCWIDQHELDKGKGLKRFQLLIMELMRTGIFHPHAYVRQLIISGIMDSTLNVGDHER KKRHYQMLKQLPGSFIGDILEEGKLVEGSLILETMRIYSNERRLLLRGILNGSLQSSVKSRKEEQEKKSRIAPAKDDALSDHWKTIKSLSSNSTLKKMRT ESKVENLKASIALLLQFPKCITVSDSGVDESTLSGKRSFESVSSKLDVLEGTPGCEECKRAKRQKLSEETSSVTQGHSPVSDDEDTWWMRKVPKTLDQSK VDQIIKSSKQAPKSRQKVVRKTQSLAQLAAARIENSQGASTSHVCESKINCPHHRTPLDGENIKTVDRTRAGGDIIVVGKALKQLRLVEKRMITVWLKTM VMQLVENTEKIASKGNQYNMPYVPDDDRNSARWKLGEDELSVILHLMDVCNDLVSATKFLLWLLPKVQNHQSSTIHSGRSVMMLQRNMESHACEVGEAFW LSSLRRYENMMIAIDLLPDVLSTIMQRLATLLASNVRISGSSTLVYSRYLLKRYSNVSSIVEWEKNRKSTYDKRLISELDSGRSPDGEFGFPLGVPAGVD DPDDFLRQKISGNRISRVGIGMRDVVQRHIDDTLHYFLGKERKIFGAGAHKGPAPEKLDDGHVAHQIVMGLMECMRQTGGAAQEGDPSLVSSAVSAIVNN VGPAIVKIPDVHPFNNNSIAPPTNSLTFAQRVLHIHIICLRLLKEALGERQSRVFEIALATEACSALAAAYSPGKASRGQFQMSPDTHDSSTNFSNETSA KGLLGKGTKSAAAISALVIGAVIYGVTNLERLVTVFRLKEGLDVIQFVRSTKTNSNGNARTIGALKVDNLLEVNVHWFRVLVGNCRTVSDGFIVELLGEP SIVALARMQRILPLSLVLPPAYSIFALVLWRPFILSSNLANREDIHLLYQSLTVAIGDAIKHLPFRDVCLRDSQGFYDLVTTDACDADFAAILDLNGLDV HVKSMAFVPLRGRLFLNSVIDGQLPSSLFTQEDSKRTSLLGGSKLPHLENEMKLMDKLVKVLDALQPAKFHWQWVELRLLLNEQALTENLETRDMSLADA IRSSSPGPEKGGASENEKKFIELILTRLLVRPDAAPLFSELVHLFGRSLEDSMLLHVKWFLGGQDVLLGRKTIRQRLVNIADSKGLSTKAQFWKPWGWSS SRSDPTLNRIDKKFENVASIEEGEVVDDGADTKKSGKGSIHISDVESNSVSQHHVTERALIELVLPCIDQGSDDSRNTFASDLIKQLNNIELQINAVTRG VNKQAGTASPGLEGGTGSKVSNRKGMRGGSPGLSRRTSGVVDSSLPSPAALRTSMSLRLQLLLRLLPTICTDGEPSGRNMKHMLASVILRLLGSRVVYEN SEVSSTRSQNVQPKRESESLALEAASVNLSGESLFDRLLLVLHGLVSNSKPSWLKPRPPSKAGGDSIKDSTGFDRELVEGLQSDLDRMQLPSAIRWRIQA AMPILLPSVRCSVSCQPPAVPIAAVAALQPTVSSPGNPPPRNSSSTTRASSALPGKSSKQAPPPAQQDGDVEIDPWLLLEDGTGSGPSSVNTTIVGGSDQ VNLRASNLLKGAVRIRRTDLSYIGAVDDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	0	1
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	1.0	0.9824
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	1.4	0.9785
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	2.0	0.9723
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	2.4	0.9741
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Lus10015908 [exp]	4.4	0.9527
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036223 [exp]	4.5	0.9652
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10038363 [exp]	4.9	0.9608
AT4G30100			P-loop containing nucleoside t...		Lus10033462 [exp]	5.1	0.9462
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	6.0	0.9531
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	7.3	0.9606

Compare expression of checked genes

Lus10014778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.