Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00460 527 / 0 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2) AT1G01700 520 / 0 ATROPGEF2, ROPGEF2 RHO guanyl-nucleotide exchange factor 2 (.1) AT2G45890 468 / 3e-162 RHS11, ATROPGEF4, ROPGEF4 ROOT HAIR SPECIFIC 11, RHO guanyl-nucleotide exchange factor 4 (.1) AT5G02010 406 / 4e-137 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 378 / 6e-126 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G05940 375 / 7e-124 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT3G55660 356 / 6e-117 ATROPGEF6, ROPGEF6 ROP (rho of plants) guanine nucleotide exchange factor 6 (.1) AT1G79860 347 / 2e-114 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT3G24620 345 / 1e-113 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT4G13240 330 / 1e-107 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036352 [exp] 546 / 0 AT1G01700 387 / 2e-132 RHO guanyl-nucleotide exchange factor 2 (.1) Lus10036351 [exp] 546 / 0 AT4G00460 360 / 3e-124 RHO guanyl-nucleotide exchange factor 3 (.1.2) Lus10040248 [exp] 395 / 9e-132 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 391 / 8e-131 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10004676 [exp] 390 / 5e-130 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 390 / 7e-129 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 389 / 4e-128 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10000399 [exp] 380 / 3e-126 AT5G05940 630 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10023983 [exp] 365 / 4e-120 AT4G38430 696 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G159700 [exp] 608 / 0 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 597 / 0 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.006G092600 [exp] 400 / 7e-134 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.010G196000 [exp] 395 / 5e-132 AT5G05940 659 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.016G104400 [exp] 397 / 2e-131 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.008G062000 [exp] 391 / 5e-130 AT5G05940 664 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Potri.004G179742 [exp] 389 / 1e-129 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.009G140100 [exp] 386 / 7e-129 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.005G247100 [exp] 350 / 4e-115 AT4G38430 553 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.018G082400 [exp] 345 / 4e-113 AT3G24620 597 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [flax] [poplar] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Lus10014779 pacid=23150183 polypeptide=Lus10014779 locus=Lus10014779.g ID=Lus10014779.BGIv1.0 annot-version=v1.0 ATGGAGAATTCATCGTCCAGCTACGATGGAAGCTATGATCTTGGGTACTCGACGATGAGCGGGGATTCGACTGTGTTCGGAAGGACTTACTCCGAAACGT CGGAGAACAACAGCTGCTACTCGAGTGAGCCGCCGTCTCCTTGTGATTGGCGGCCGGAGTCGAAGTCAACCAAACACAGAGGAGGAGGATCTTCTTATCA TCTCAACAGATCTCTGTTGGTTAAGCAGGATATGATGAAGCCCAAGATTCATCAGAACCAGGTCAACGTTGATGCTGATGGTGATGTTGACCACGATGAA GATCACGAGTCCACTGACTTAGAACTTGAGATGATGAAAGAGAGGTTTTCGAAGCTTCTGCTGGGAGAAGACATGTCAGGAAATGGGAAAGGTGTATGCA CAGCTGTGACCATCTCCAACTCCATAACAAATCTCTATGCGACTGTGTTTGGACAGAATTTGAGGTTGGAGCCATTGAAAGCAGAGAAGAAAGGGATGTG GAGGAGAGAAATGGATTGTCTTCTGTCTGTGTGCGATTACATCGTCGAACTCATCCCCAAATCTCAGAACCTTCGCGACGGAACTGCTCTCGAGGTGATG AAAAGCAGGGTGAGATCAGACATTTACATGAACCTTCCAGCACTCAAAAAGCTAGACGCAATGCTTATAGAAATACTGGAAAGTTTCAGTGAAGCAGAGT TCTGGTATGCAGAACAAGGAAGCATGTCATCAAATTCGACACGGTCCGGTTCGTTCAGGAGGGTAGTGATCCACAGGACAGAAGAGAAATGGTGGGTCCC TGTTCCATGTGTTCCTTCCGGTGGGATCTCCGAGAAATCGAGGAAACATCTGCGAGATAAGCGCGACTGCTCTAACCAAATCCACAAGGCAGCCATGGCC ATCAACACCAGCATTCTCACCGACATGGAGATCCCCGAATCGTACATGGCTTCCCTCCCCAGGTTACCTATGAAAATAACAAGTAATGAAATAAATAACC GTGCAGAGTGGGAAAGTGAGCGTAGGGGAGACGATATACAAGTACATGTGCACGATAGAAAAGTTCTCCCCGGAGAGGCTACTCAGATGGCCCCGGAGAG GCTACTGAGCTGCCTCAACATAGAATCGGAGCACGAAGCGCTCGAGCTGGCCGATAGGGTGGAAGCATCGATGTACACGTGGCGGCGCAAGGCTTGCCTG AGCAATTCGAGATCATCGTGGGGGGACTTGGTGAAAGACCTTGTGTATGAAGTGGACAGGATAGACAAGAACCATGTGTTAGCACAGAGGGCAGAGAGCT TGCTCTTCTGCTTGAAGCAAAGGTATCCCGGGCTTTCGCAGACATCATTGGATATATGCAAGATCCAGTGCAATCGGGATGTGGGACAGGCGATACTGGA GAGCTACTCAAGGGTGTTGGAAGGTCTGGCATTCAACATTGTTGCATGGATTGAAGATGTTCTTTTTGTAGATAAATCTGTTAAGAGCCAACAGTAA
AA sequence Show only first row Show all	>Lus10014779 pacid=23150183 polypeptide=Lus10014779 locus=Lus10014779.g ID=Lus10014779.BGIv1.0 annot-version=v1.0 MENSSSSYDGSYDLGYSTMSGDSTVFGRTYSETSENNSCYSSEPPSPCDWRPESKSTKHRGGGSSYHLNRSLLVKQDMMKPKIHQNQVNVDADGDVDHDE DHESTDLELEMMKERFSKLLLGEDMSGNGKGVCTAVTISNSITNLYATVFGQNLRLEPLKAEKKGMWRREMDCLLSVCDYIVELIPKSQNLRDGTALEVM KSRVRSDIYMNLPALKKLDAMLIEILESFSEAEFWYAEQGSMSSNSTRSGSFRRVVIHRTEEKWWVPVPCVPSGGISEKSRKHLRDKRDCSNQIHKAAMA INTSILTDMEIPESYMASLPRLPMKITSNEINNRAEWESERRGDDIQVHVHDRKVLPGEATQMAPERLLSCLNIESEHEALELADRVEASMYTWRRKACL SNSRSSWGDLVKDLVYEVDRIDKNHVLAQRAESLLFCLKQRYPGLSQTSLDICKIQCNRDVGQAILESYSRVLEGLAFNIVAWIEDVLFVDKSVKSQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10014779 [exp]	0	1
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	4.5	0.8561
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036351 [exp]	6.7	0.8360
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	13.3	0.8488
AT2G15730			P-loop containing nucleoside t...		Lus10021749 [exp]	15.1	0.8002
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	18.0	0.7215
AT1G54940		PGSIP4	plant glycogenin-like starch i...		Lus10031507 [exp]	23.6	0.7227
AT5G46230			Protein of unknown function, D...		Lus10001891 [exp]	24.2	0.7711
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	38.3	0.7554
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035901 [exp]	38.4	0.7162
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	45.4	0.7649

Compare expression of checked genes

Lus10014779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.