Gene [FLAX] | FIBexDB

Lus10014780 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT4G00467	167 / 5e-52			Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
AT3G55470	73 / 4e-16			Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10040291 [exp]	75 / 1e-16	AT3G55470	191 / 4e-63	Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Lus10029565 [exp]	74 / 2e-16	AT1G63220	221 / 1e-75	Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Lus10002235 [exp]	72 / 5e-16	AT1G63220	216 / 2e-73	Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Lus10023410 [exp]	55 / 2e-09	AT3G55470	149 / 5e-47	Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.014G084100 [exp]	192 / 6e-62	AT4G00467	194 / 4e-63	Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Potri.010G203000 [exp]	86 / 4e-21	AT3G55470	167 / 6e-54	Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Potri.010G203100 [exp]	77 / 9e-18	AT3G55470	163 / 3e-52	Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Potri.002G155600 [exp]	61 / 1e-11	AT1G63220	202 / 1e-67	Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0154 [flax] [poplar]	C2	PF00168 [flax] [poplar]	C2	C2 domain

Representative CDS sequence

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>Lus10014780 pacid=23150160 polypeptide=Lus10014780 locus=Lus10014780.g ID=Lus10014780.BGIv1.0 annot-version=v1.0

ATGAAAATGATGAACAAAGCAACACTTGAGATTTTGCTTGTCAACGCCAGTGGCATCAAACGCACAAAACTCATAGGGACACCGTACTACTATGTCATCA

TCGAATGTGCCAATCAACACCGTATAAGCAAACTGTCGTCAGGTGAAGATCACAAGACATGTTGGAACCAGAAGTTCAGGTTCGAACTGCCGCTGATCGA

TTGGAAACCAATGACTCACCTGAAGCTAACAATCATGGACACAGAAGTGTTCAAAACTGGAGAGTGTGTTGGTGAAACAATAATATACCTTGGAGGGATA

GTGGCAGAGGGTAAAAACAGAGGAATAGTGGAGATGAAACCATCTCCTTACAATGTGGTGCTTGAAGATGGTACTTTCAAGGGTCAGCTCAAAATTGGCA

TCAAATTCACTATCACCAATGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGACAAGGAGATGGGAGATGTGCTGTTGCCAAGTAG

TACTAATATTGGTGCTGCATCAACATCAAAGAAGAAGAAGAAGAGATCAGCATGGGAAGCCATTACAAATGTCTGGAAATCTTCATGGTGGAAGTTCTGG

AGCTATTGCAGCCCTAAGATCAATGCCAAGGCCAAACAACCAAAGTCAAAGTTTAAGTAG

AA sequence

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>Lus10014780 pacid=23150160 polypeptide=Lus10014780 locus=Lus10014780.g ID=Lus10014780.BGIv1.0 annot-version=v1.0

MKMMNKATLEILLVNASGIKRTKLIGTPYYYVIIECANQHRISKLSSGEDHKTCWNQKFRFELPLIDWKPMTHLKLTIMDTEVFKTGECVGETIIYLGGI

VAEGKNRGIVEMKPSPYNVVLEDGTFKGQLKIGIKFTITNEEEEEEEEEEEEEEVDKEMGDVLLPSSTNIGAASTSKKKKKRSAWEAITNVWKSSWWKFW

SYCSPKINAKAKQPKSKFK

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00467			Calcium-dependent lipid-bindin...		Lus10014780 [exp]	0	1

Lus10014780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.