Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01770 808 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036349 [exp] 489 / 5e-169 AT1G01770 285 / 5e-90 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157400 [exp] 869 / 0 AT1G01770 843 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07287 [flax] [poplar] AtuA Acyclic terpene utilisation family protein AtuA
Representative CDS sequence Show only first row Show all	>Lus10014782 pacid=23150189 polypeptide=Lus10014782 locus=Lus10014782.g ID=Lus10014782.BGIv1.0 annot-version=v1.0 ATGGAGGTTGAAGCTGACGGTGACATCTCAAATTGTACGATCAAGCTGAGGGTCAATCCTCAGAGGCGGAGGGAGAAGGTCTACGTTGGCTGCGGTGCAG GATTCAGCGGCGACAGGCCGTCGGCTGCTCTGAAGTTGCTCCAGCGCGTTCCGGAGATGAACTATCTCGTCCTTGAATGTTTGGCCGAACGCACTCTTGT TGATCGCTTCCATGCTATGGCCTCCGGCGGCGATGGCTTTGATCCTCGCATCTCTGATTGGATGTCTTTACTACTGCCCTTGGCAGTGGATAAAGGGACT TGCATAATCACCAATATGGGCGCAATGGATCCAATTGGAGCACAGGAGAAAGTTCTCCAGATCGCTAGTAAGCTCGGGTTGACTATTTCGGTTGCGGTTG CTCATGAGGTTTACTGCAGTGAATCAGTGTACTCACCAGAGAAGAAACCAGTGGCGATCGAAAATGGTGTTAGCACTTATCTTGGAGCAGCTCCAATCGT CCAATGTCTAGAAAAGTACCATCCCGATGTTGTTATTACTTCTCGGGTTGCAGATGCCTCCTTGTTTCTTGCACCGATGGTTTACGAACTAGGCTGGAAC TGGGATGACTTAGATAAGCTAGCTCAGGGATCACTTGCTGGCCATCTCTTAGAATGTGGTTGTCACCTTACTGGGGGATACTTCATGCATCCAGGTGATA AAAATCGGGATATCTCCTTACCTTCTCTTTTGGATACGTCACTTCCATATGCTGAAATATGTCACGGAGGTGAAGTATGTGTTGCTAAGCCTGTTTGTAG TGGCGGGGAGTTAAGCGTGAATACATGTGCCCAACAACTCCTTTATGAGGTTGGAGATCCATCTGCTTATGTCACCCCTGATGTGGTACTTGATCTTCAG GATGTTTCATTTCACTCATTATCAAGTTGCAAGATTCTTTGTACCGGAGCGAAACCTTCAAACACGGCAGTACCTGAAATGCTACTGCGCTTGATCCCCA AGGCTTTGGATTGTGGATGGAAAGCCTGGGGAGAGATATCTTACGGTGGATATAAGTGTGTGGAACGTGCTAAAGCTGCTGAGTATCTAGTCCGTTCTTG GATGGGAGAAGCCTGTCCAGATATCAGTGACAGGATAATTTCGTATATCATTGGTCTTGATAGCCTAAAAGCCATTGATATTCATGCTGGTGGTTCTGCT TCAGCATGCAACAGTGAAGATATCAGATTGCGAATGGACGGACTGTTCAAGTCAAAGGATGATGCAATTCGGTTTACTCACGAGTTCACAGCTTTATATA CTAATGGACCTGCAGGAGGCGGCGGCATTAGCACAGGACACAAGAAAGAAATCATTCTCAATAAAGAGCTGGTTGCACGTGAAAATGTTCTGTGGCGGGT GCACTCAAAACGAGCCAATCCAAGTAAAGAAGATCCCACACCAAGAAATGTGGCAAGAACAGGTGATCATAGTGAATCTTCATCGCCAGAAAGTACGATT ACCTGTCCAGCATCGTCTCGGCCAGTTCCTACTCCAGCTCCCTCTGGCCAGAAGATTGCGTTGTACGAGGTAGCACATAGTAGAGCCGGCGATAAAGGAA ACGACTTGAACCTGTCTCTGATACCCTACTTCCCTGGAGATGTTGAGAGATTGAAGCTGATAGTAACACCCCAGTGGGTAACCAAAGTTCTCTCCCCACT TTTGAACGAGTCATCGTTTCTTGACGTGGAGGGCATCTCGAAGAGAGATGAAAGAGGCGACAAACAAGTTAACGTCGAAATTTATGAAGTCGGGGGAGTC CATGCGCTGAACATTGTGGTCCGGAACATTCTAGATGGCGGCGTGAATTGCTCGAGGAGGATCGACCGGCATGGAAAGACTGTCTCGGATGTCTTACTGT GCCAGCAACTTGTGTTACCCCCACTGGAAGCATGA
AA sequence Show only first row Show all	>Lus10014782 pacid=23150189 polypeptide=Lus10014782 locus=Lus10014782.g ID=Lus10014782.BGIv1.0 annot-version=v1.0 MEVEADGDISNCTIKLRVNPQRRREKVYVGCGAGFSGDRPSAALKLLQRVPEMNYLVLECLAERTLVDRFHAMASGGDGFDPRISDWMSLLLPLAVDKGT CIITNMGAMDPIGAQEKVLQIASKLGLTISVAVAHEVYCSESVYSPEKKPVAIENGVSTYLGAAPIVQCLEKYHPDVVITSRVADASLFLAPMVYELGWN WDDLDKLAQGSLAGHLLECGCHLTGGYFMHPGDKNRDISLPSLLDTSLPYAEICHGGEVCVAKPVCSGGELSVNTCAQQLLYEVGDPSAYVTPDVVLDLQ DVSFHSLSSCKILCTGAKPSNTAVPEMLLRLIPKALDCGWKAWGEISYGGYKCVERAKAAEYLVRSWMGEACPDISDRIISYIIGLDSLKAIDIHAGGSA SACNSEDIRLRMDGLFKSKDDAIRFTHEFTALYTNGPAGGGGISTGHKKEIILNKELVARENVLWRVHSKRANPSKEDPTPRNVARTGDHSESSSPESTI TCPASSRPVPTPAPSGQKIALYEVAHSRAGDKGNDLNLSLIPYFPGDVERLKLIVTPQWVTKVLSPLLNESSFLDVEGISKRDERGDKQVNVEIYEVGGV HALNIVVRNILDGGVNCSRRIDRHGKTVSDVLLCQQLVLPPLEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01770			unknown protein		Lus10014782 [exp]	0	1
AT1G13990			unknown protein		Lus10037142 [exp]	2.6	0.8511
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	2.6	0.8048
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	2.8	0.8255
AT2G35510		SRO1	similar to RCD one 1 (.1)		Lus10035390 [exp]	4.0	0.8506
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	8.8	0.8105
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	9.0	0.7968
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	9.6	0.8382
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10030296 [exp]	10.5	0.7721
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	11.3	0.7854
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	13.9	0.7700

Compare expression of checked genes

Lus10014782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.