Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00660 822 / 0 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 782 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 766 / 0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT3G19760 292 / 3e-94 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT3G13920 285 / 2e-91 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G72730 281 / 5e-90 DEA(D/H)-box RNA helicase family protein (.1) AT1G54270 281 / 7e-90 EIF4A-2 eif4a-2 (.1.2) AT1G51380 276 / 3e-88 DEA(D/H)-box RNA helicase family protein (.1) AT5G11200 261 / 4e-82 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT5G11170 261 / 4e-82 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030377 [exp] 918 / 0 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017804 [exp] 873 / 0 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017407 [exp] 286 / 9e-92 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 276 / 1e-87 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10014260 [exp] 259 / 5e-81 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10006878 [exp] 256 / 3e-80 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 256 / 3e-80 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017153 [exp] 254 / 2e-79 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10025960 [exp] 258 / 5e-75 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157500 [exp] 867 / 0 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 866 / 0 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.005G093900 [exp] 294 / 7e-95 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 292 / 3e-94 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.018G061050 [exp] 281 / 5e-90 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 281 / 5e-90 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 280 / 1e-89 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 278 / 6e-89 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G253100 [exp] 259 / 2e-81 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.018G028600 [exp] 259 / 3e-81 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10014783 pacid=23150199 polypeptide=Lus10014783 locus=Lus10014783.g ID=Lus10014783.BGIv1.0 annot-version=v1.0 ATGAACAACAACAATAGCAACAACAACAACAGAGCTCGGTATCCGCCTGGTATCGGGTTTGGGAGAGGCGGAGGAATGAATGCGAACCCTAATTTTCAGT CAAGGGGTCCGCATCAGCCGCAGTACGTGCAGCGGAATCACCAGCAGTTTCAGAATCCTCAGCAGCAACAATATCAGCAGCAGCAGCAACAATATCAGCA ACAGCAGCAGCATCAACAGCATCAGCAACAGCAGCAGTGGTTGAGGAGGAACCAGTTACCTGCTTCGGATTCCGTTGCTGAGGAGGTGGAGAAGACTGTT CAGTCTGAGGCCGTTGACTCCAGTTCACAAGACTGGAAGGCAAGTCTGAAGTTACCACCAGCAGATACACGTTACAGGACAGAGGATGTCACTGCTACTA AAGGGAATGAATTTGAAGACTACTTTCTGAAGCGTGAACTTTTGATGGGAATATATGAGAAAGGGTTTGAAAGACCTTCTCCAATTCAAGAGGAGAGCAT ACCAATTGCACTCACTGGCAGCGATATTCTTGCTAGAGCAAAAAATGGAACAGGGAAGACAGCTGCATTTTGTGTTCCTGCTCTGGAAAAGATAGACCAA GATTACAATGTTATTCAAGCTGTTATCTTGGTACCAACTCGTGAATTAGCTCTTCAAACTTCTCAAGTTTGTAAAGAGCTTGCAAAACATTTGAAAATTC AAGTAATGGTAACTACTGGTGGTACAAGCTTGAAGGATGATATCATGCGTCTGCATCAGCCTGTCCATTTGCTTGTTGGGACTCCGGGAAGAATTCTAGA TCTTGCAAAAAAGGGTATCTGCATTTTGAAAGACTGCTCTATGCTTGTTATGGATGAGGCTGATAAGTTATTGTCGCCAGAGTTTCAACCATCAGTGGAG CAGTTAATTCGCTTTCTTCCTGGAAACCGCCAGATTCTGATGTACTCTGCTACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGATATCTTAAGAAGC CTTATGTCATCAATCTTATGGATGAGCTTACTCTTAAGGGTATTACACAGTTCTATGCCTTTGTTGAGGAAAGGCAGAAAGTGCACTGTCTTAACACTCT CTTCTCTAAGCTGCAAATAAACCAGTCTATCATCTTCTGCAACTCGGTAAACCGGGTAGAGCTCCTGGCCAAGAAGATTACAGAACTTGGTTATTCTTGT TTCTACATTCATGCAAAAATGTTACAAGATCACCGTAATAGAGTTTTCCATGACTTCCGCAATGGTGCATGCAGGAATCTTGTTTGCACTGATCTATTCA CCAGAGGTATAGATATACAGGCAGTGAACGTTGTTATAAACTTTGACTTCCCCAAGAACTCAGAGACATATCTACACAGGGTTGGTAGATCGGGAAGGTT TGGACACCTTGGATTGGCAGTGAATTTGGTCACCTTTGAGGACCGTTTCAATTTGTATAGGATCGAGCAAGAACTTGGGACTGAAATTAAGCAGATTCCT CCTCATATTGACCAGGCAATCTATTGCCGGTAG
AA sequence Show only first row Show all	>Lus10014783 pacid=23150199 polypeptide=Lus10014783 locus=Lus10014783.g ID=Lus10014783.BGIv1.0 annot-version=v1.0 MNNNNSNNNNRARYPPGIGFGRGGGMNANPNFQSRGPHQPQYVQRNHQQFQNPQQQQYQQQQQQYQQQQQHQQHQQQQQWLRRNQLPASDSVAEEVEKTV QSEAVDSSSQDWKASLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQ DYNVIQAVILVPTRELALQTSQVCKELAKHLKIQVMVTTGGTSLKDDIMRLHQPVHLLVGTPGRILDLAKKGICILKDCSMLVMDEADKLLSPEFQPSVE QLIRFLPGNRQILMYSATFPVTVKDFKDRYLKKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSC FYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLVTFEDRFNLYRIEQELGTEIKQIP PHIDQAIYCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	0	1
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10030377 [exp]	1.0	0.9616
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	2.4	0.9189
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	6.5	0.8970
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	7.3	0.8591
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	7.5	0.8799
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	12.5	0.8699
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	13.2	0.8901
AT1G23280			MAK16 protein-related (.1)		Lus10019648 [exp]	13.6	0.8509
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	13.6	0.8919
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	18.1	0.8945

Compare expression of checked genes

Lus10014783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.