Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45820 146 / 1e-44 Remorin family protein (.1) AT3G61260 144 / 1e-43 Remorin family protein (.1) AT5G23750 142 / 4e-43 Remorin family protein (.1.2) AT3G48940 139 / 5e-42 Remorin family protein (.1) AT4G00670 73 / 6e-17 Remorin family protein (.1) AT1G63295 71 / 9e-16 Remorin family protein (.1) AT3G57540 49 / 5e-07 Remorin family protein (.1) AT2G41870 49 / 6e-07 Remorin family protein (.1) AT1G67590 46 / 4e-06 Remorin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030379 [exp] 210 / 8e-70 AT3G61260 178 / 4e-57 Remorin family protein (.1) Lus10018840 [exp] 166 / 2e-52 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10017811 [exp] 160 / 7e-50 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10039215 [exp] 140 / 2e-42 AT3G61260 196 / 7e-64 Remorin family protein (.1) Lus10027460 [exp] 137 / 4e-41 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10001477 [exp] 117 / 9e-33 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10008014 [exp] 113 / 1e-32 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10008477 [exp] 113 / 2e-31 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10024514 [exp] 82 / 5e-20 AT5G23750 113 / 5e-32 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081300 [exp] 162 / 8e-51 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.002G157700 [exp] 159 / 1e-49 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.015G143600 [exp] 137 / 5e-41 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.012G140800 [exp] 137 / 8e-41 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.003G124400 [exp] 122 / 2e-35 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.001G107000 [exp] 117 / 2e-33 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.012G140900 [exp] 64 / 3e-13 AT3G48940 78 / 6e-19 Remorin family protein (.1) Potri.006G053200 [exp] 56 / 1e-09 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.016G054400 [exp] 56 / 1e-09 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.008G178300 [exp] 47 / 2e-06 AT1G67590 306 / 1e-102 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10014785 pacid=23150211 polypeptide=Lus10014785 locus=Lus10014785.g ID=Lus10014785.BGIv1.0 annot-version=v1.0 ATGGCGCAGCAAGTGATGGAGAACGTAGAACCTCAACCACCTCTAGCTGAAGCTCCAGTCCCGGTGCCGTTTCCACCGCCGTCAGCCGTCGACGAGAACA CTAATTTCCCTCCTACTACGCCGGAAGAGGCGACACCAGCAGAATCCAAACCTCCGACAGTAACGGCGGATGATGAAAATGTTGCTCTTGCTGAACTTGA TAAGGAGAAGAAGTCTTCCTTTATCAAAGCATGGGAAGACAGTGAGAAAAGTAAAGTGACTAACAAAGCTCATAAACAGCTGTCTGCTGTAGCTGCATGG GAGAACAGCAAGAAAGCAGTTGCGGAAGCTAAGCTGAAAAAGATCGAGGAGCAACTGGAGAAGAAAAAGGCAGGATACGCAGAGAAGATGAAGAACCAAA TTGCCCAAATCCACAAAGAAGCTGAAGAAAAAAGGGCATTGGTCGAAGCCAAGCGCGGTGAAGAGATTCTGAAAGCCGAAGAAATGGCTGCGAAATATCG CGCCACTGGCCATATCCCTAAGAAGCTTCTTGGTTGCTTCTGA
AA sequence Show only first row Show all	>Lus10014785 pacid=23150211 polypeptide=Lus10014785 locus=Lus10014785.g ID=Lus10014785.BGIv1.0 annot-version=v1.0 MAQQVMENVEPQPPLAEAPVPVPFPPPSAVDENTNFPPTTPEEATPAESKPPTVTADDENVALAELDKEKKSSFIKAWEDSEKSKVTNKAHKQLSAVAAW ENSKKAVAEAKLKKIEEQLEKKKAGYAEKMKNQIAQIHKEAEEKRALVEAKRGEEILKAEEMAAKYRATGHIPKKLLGCF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61260			Remorin family protein (.1)		Lus10014785 [exp]	0	1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10036730 [exp]	3.3	0.8717
AT3G04970			DHHC-type zinc finger family p...		Lus10004149 [exp]	3.9	0.8926
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	6.0	0.8726
AT1G67190			F-box/RNI-like superfamily pro...		Lus10020611 [exp]	6.2	0.8675
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	7.5	0.8503
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10042386 [exp]	15.5	0.8792
AT5G22370		QQT1, EMB1705	QUATRE-QUART 1, EMBRYO DEFECTI...		Lus10007747 [exp]	17.0	0.8600
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	21.1	0.8920
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	21.2	0.8635
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	22.9	0.8850

Compare expression of checked genes

Lus10014785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.