Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63310 277 / 8e-95 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT4G09320 169 / 3e-53 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT4G11010 170 / 7e-53 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G23900 167 / 1e-51 Nucleoside diphosphate kinase family protein (.1) AT4G23895 166 / 1e-48 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT1G17410 87 / 3e-21 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017931 [exp] 399 / 7e-143 AT5G63310 301 / 3e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10032392 [exp] 179 / 1e-56 AT4G11010 328 / 1e-115 nucleoside diphosphate kinase 3 (.1) Lus10024286 [exp] 166 / 2e-52 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1) Lus10001824 [exp] 167 / 2e-51 AT4G23900 377 / 4e-134 Nucleoside diphosphate kinase family protein (.1) Lus10003878 [exp] 167 / 3e-51 AT4G23900 362 / 6e-128 Nucleoside diphosphate kinase family protein (.1) Lus10003844 [exp] 160 / 5e-50 AT4G09320 264 / 7e-92 Nucleoside diphosphate kinase family protein (.1) Lus10023076 [exp] 95 / 5e-23 AT4G23900 189 / 4e-59 Nucleoside diphosphate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G093800 [exp] 304 / 1e-105 AT5G63310 281 / 1e-96 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Potri.014G049900 [exp] 173 / 5e-55 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1) Potri.002G138800 [exp] 170 / 6e-54 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.001G091001 [exp] 172 / 2e-53 AT4G23900 335 / 2e-117 Nucleoside diphosphate kinase family protein (.1) Potri.003G140600 [exp] 168 / 4e-52 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.003G068100 [exp] 83 / 1e-19 AT1G17410 229 / 1e-77 Nucleoside diphosphate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [flax] [poplar] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10014787 pacid=23150192 polypeptide=Lus10014787 locus=Lus10014787.g ID=Lus10014787.BGIv1.0 annot-version=v1.0 ATGGAAGCCGTAGGAATAATTGGATGTAGCAGCAGCAGATTATCCGTCTCCTCATCCGTTGGCCGCTCTCCGGCCGGCGACAACTCTTTCCGATGTCAGA AGCCCAACCTTGGAAGAGTAGCAGCATTCCATTCGTCCTCCAATCTTTTCACATCATCCCAAACAGCTAAGCCACTCCTCCGCAAGTCAACCAACAAATC TCGCGTCTTCCTTCCTCACTTGGTCGCTTCATTGGAAAAAGTTGAGGAGACATACATTATGGTCAAGCCCGATGGCGTTCAGCGAGGACTTGTAGGAGAA ATCATATCAAGGTTTGAGAAGAAAGGGTTCAAACTCGCGGCCTTGAAGCTCTTCCAATGCCCTAAACAACTCGCAGAGGAGCACTATAAGGATCTCAAGT CCAAGTCGTTCTACCCTAAACTCATTGACTATATCACTTCTGGTCCAGTTGTGTGCATGGCTTGGGAAGGTGTCGGGGTTGTGGCATCAGCTCGTAAGCT AATTGGATCGACAGATCCGCTTCAAGCTGAACCTGGCACCATTAGAGGGGACCTTGCTGTTCAGACAGGGAGGAACGTCATTCATGGCAGTGACAGCCCT GACAATGGGAAGCGCGAAGTTGGTCTGTGGTTTAAAGAAGATGAAATATGTCAGTGGACACCAGCCCAAGCAGCTTGGTTAAGAGAGTGA
AA sequence Show only first row Show all	>Lus10014787 pacid=23150192 polypeptide=Lus10014787 locus=Lus10014787.g ID=Lus10014787.BGIv1.0 annot-version=v1.0 MEAVGIIGCSSSRLSVSSSVGRSPAGDNSFRCQKPNLGRVAAFHSSSNLFTSSQTAKPLLRKSTNKSRVFLPHLVASLEKVEETYIMVKPDGVQRGLVGE IISRFEKKGFKLAALKLFQCPKQLAEEHYKDLKSKSFYPKLIDYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVIHGSDSP DNGKREVGLWFKEDEICQWTPAQAAWLRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	0	1
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	1.0	0.9203
AT2G41950			unknown protein		Lus10016243 [exp]	1.4	0.8844
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	2.4	0.8717
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	3.5	0.8644
					Lus10032893 [exp]	5.0	0.8071
AT3G60520			unknown protein		Lus10042880 [exp]	6.2	0.8150
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	8.8	0.8237
AT3G19650			cyclin-related (.1)		Lus10002122 [exp]	11.7	0.8196
AT5G47320		RPS19	ribosomal protein S19 (.1)		Lus10027711 [exp]	12.2	0.8526
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	15.6	0.8118

Compare expression of checked genes

Lus10014787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.