Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G091100 [exp] 42 / 4e-05 AT3G48490 48 / 2e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014788 pacid=23150204 polypeptide=Lus10014788 locus=Lus10014788.g ID=Lus10014788.BGIv1.0 annot-version=v1.0 ATGTTCGGAAGGTTGAGACCGCCTTCGTCTTCCCTGGACAGTTTAGAACTGGAGAGGTCACATTCCAAGTTCTTCAAAGACGATTCTCTCTCCATCTACG AGGCTACGTTGATGAAGCTGAAGCGAGGTTCTCAACTTGCTACTACCTACAATCTTCATCCTCCCATCGACGATCTAGTGGATGCTGAACAAATTGATTG CATTTCTTCCATTTCTTCAACGACTACTTGTGAGGGCCAGTCTGCCCAACCTCTGGCTGCTGCAAATTGTTCTTCTTCCCCAATTTCTTCAACTTCAACT GTTGACTTGAAACGCCAGCCGTCAGTTGTCGACCTGTTCTCTAAGTACAAACGGTCGCATCAACAATCTCAAACAGATATTACGATGGCAGCCTCTGATG ATGTCGACTTGGGGACCAGTTCATAG
AA sequence Show only first row Show all	>Lus10014788 pacid=23150204 polypeptide=Lus10014788 locus=Lus10014788.g ID=Lus10014788.BGIv1.0 annot-version=v1.0 MFGRLRPPSSSLDSLELERSHSKFFKDDSLSIYEATLMKLKRGSQLATTYNLHPPIDDLVDAEQIDCISSISSTTTCEGQSAQPLAAANCSSSPISSTST VDLKRQPSVVDLFSKYKRSHQQSQTDITMAASDDVDLGTSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48490			unknown protein		Lus10014788 [exp]	0	1
AT4G08520			SNARE-like superfamily protein...		Lus10037624 [exp]	5.4	0.7205
AT3G10330			Cyclin-like family protein (.1...		Lus10031056 [exp]	9.9	0.6628
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	11.3	0.6960
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	11.7	0.6822
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	15.1	0.6988
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	17.0	0.6591
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	32.6	0.6854
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10019257 [exp]	40.1	0.5498
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	41.5	0.6802
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	41.9	0.6685

Compare expression of checked genes

Lus10014788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.